Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00067 ATGATTACAGTGGATGTTGAAAAGATGGAGAAGGAAACGCAGCGAGCCAGGAAAAGGCCTAGGGCGGTCTGGGACTCGGCACCGTCGGAAGAAGAGACGCGAAGGGCTTTGAATGTACGTAGAGAAGGAATTGGAAGGGCTGGATCGCCTCCGATGAGGGACGATGATCGAGAGGGCCACTACGTTTTTAATCTTGGCGAGAATCTCACTCCGAGATTCACTCAGCATGTTGCTAGTGCTGTAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGTCAAACACGAGACTACGTGGCCATAAAGGTTGTTCGAAGCATACGAAAATATCGCGATGCAGCAATGATCGAGGTTGATGTACTTCAATATCTTGCGAAGAATGACAAGGGCAATTCTCGTTGTGTACAGATTCATAGCTGGTTTGACTATCGCAATCACATATGCATTGTGTTTGAGAAGCTTGGACCTAGCTTATTTGACTTTCTAAAGAGAAATAAATACTCTCCATTTCCTTTGGATCTTGTTCGGGAATTTGGACGCCAGCTTTTGGAATCTGTAGCATATATGCATAATTTACACCTAATCCACACTGATCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATGTAAAGCTTCCTGGTTGGAAGAGGGTACCATCGGCTGAAATGCAGTTCAGGTGTTTGCCCAAGTCTAGTGCAATTAAGCTGATTGACTTTGGTAGTTCTACGTTTGATAATCAGAAACACAGCTCCATTGTTTCCACGAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTAGGGTGGAGTTATCCATGTGACTTGTGGAGTGTTGGTTGCATACTTGTTGAACTCTGCACGGGTGAAGCATTATTCCAGACGCATGAGAACTTGGAGCATATGGCAATGATGGAGATGGTGTTGGGACCATTACCAGAGCATATGATTCAGAGGGCTAATCAAAGCATGGAAAAATACTTTAGGAGAGGATCGCAGCTCAATTGGCCTGAAGGAGCAGTCTCAAGAGAGAGCATCAGAGCTGTGAAGAAGCTTGATCGTTTAAAGGTGTCTTTCCTTATTTTCGTGCTTGTACACATCAAGTCATCTTACGCTGCAATATTAGAGGTGAAAATGCGTTCCTTGAAGTCGTCAATGGTGCAGAGAATCAGCGTCTTGAGCATCAAAGAAATCGAATACTTCTTCTTTGCTATTTTGCAAAACTGCACAAATCTCGTAGAATTGAAGAAAACTCATGCCCATATAATCAAGTTCAAACTCTCACAGAGCAATTACTTGGCTACGAAAATGGTGGATGTTTGCAGCAGTTGCGCAGACATGGTCTACGCAAATTTCCTCTTTAAGCAAGTTCTTGATCCAAATTTATACATGTTCAACTCAATGATCAGAGCTTATACGCATAATCACATGTATGATCTAGCGATCGCCATGTTCAAGCAAATGGTAATTCACCCGCTTATTTCCCCAGATGAATTCACTTTCCCATTTGTCATCAAATCTTGCTCAGGCCTTCTTCTTCGTGATCTCGGCAAGCAAGTTCACGCTCAAATATGGAAAATGGGGCCAAATTGTAATCATGTGATGGAAAATTCATTACTGGCTATGTATGTCAAATGTAATAATCTCGCTGATGCACGTAAACTGTTTGATGAAATGCCTGAGAAGGATGTGATTGCATGGAACTGTCTTCTTTCAGGGCATGCTAGAATAGGACAGATGAAACATGCCAGAGCCATGTTTAATGAAATGCCTGAGAAGACTACTGTCTCTTGGACGGCCATGATTTCAGGCTACACACAAATCGGGTGCTACGGCGAAGCGCTGGATTTTTTCTGGAAGATGCAAAAGATGAGTGTTCAACCAGATGATATATCTATTCTATCTGTCTTACCAGCTTGTGCTCATCTTGGAGCTCTCGAAGCCGGGAAATGGATTCATTTCTATGCGGATAAAAACGGGTTTCTGAAGACAAGACAAATCTGCAATGCTCTTATTGAAATGTATATTCGATGCGGGTGCCTCGATCGAGGGTGGGAGTTGTTTAATCAAATGCCCGAGAAGGATGTGATTTCATGGAGTACTATGATTTTAGGATTTGCAAATCATGGGAAAGCTCAGCAAGCCATTGAACTCTTTGAAGAAATGCAAAGATCAAAGATTAAGCCTAATGCCATAACATTTCTTGGCCTTTTGTCAGCTTGTAGCCATGCAGGGCTATGGAAAGAAGGGCTAAATTGCTTCCATTCCATGAAAAGAGACTTCCGAGTGGATCAGGAAATCGAGCATTACGGATGTTTGATCGATCTTCTCGGACGTACTGGGCACTTCGATCACGCTCTCGATATTATAAAAACGATGCCGATGAAGCCAGATTCGAAGATTTGGGGTTCGCTTCTGAGTTCGAGTAGGATTTATAGCAATTTAGAGATTGCTAATATGGCGATGAATCGGCTGATGGAGTTCGAACCGGATGATGCAGGAAACTATGTGTTGCTTGCAAATATTTATGCAGATCTCAGAAAGTGGGACGGGATGTCGAGGATAAGGAAGCTCATGAGAAGTAAAAGTATGAAGAAAACTCCGGGGTGTAGCATGATTGAAGTTAATAATATGGTTCAAGAGTTTCTCTCGAGCGACATCTCGAAGCCGTTTACAGGACAGATCTTATGGATGATAGAGCTGCTTTCCTTTGACCCGAATGGAGCTGACGAAATTGACTTAACCGTTATGGAGGTTTGA 2763 42.92 MITVDVEKMEKETQRARKRPRAVWDSAPSEEETRRALNVRREGIGRAGSPPMRDDDREGHYVFNLGENLTPRFTQHVASAVGTFGRVLECWDRQTRDYVAIKVVRSIRKYRDAAMIEVDVLQYLAKNDKGNSRCVQIHSWFDYRNHICIVFEKLGPSLFDFLKRNKYSPFPLDLVREFGRQLLESVAYMHNLHLIHTDLKPENILLVSSEYVKLPGWKRVPSAEMQFRCLPKSSAIKLIDFGSSTFDNQKHSSIVSTRHYRAPEVILGLGWSYPCDLWSVGCILVELCTGEALFQTHENLEHMAMMEMVLGPLPEHMIQRANQSMEKYFRRGSQLNWPEGAVSRESIRAVKKLDRLKVSFLIFVLVHIKSSYAAILEVKMRSLKSSMVQRISVLSIKEIEYFFFAILQNCTNLVELKKTHAHIIKFKLSQSNYLATKMVDVCSSCADMVYANFLFKQVLDPNLYMFNSMIRAYTHNHMYDLAIAMFKQMVIHPLISPDEFTFPFVIKSCSGLLLRDLGKQVHAQIWKMGPNCNHVMENSLLAMYVKCNNLADARKLFDEMPEKDVIAWNCLLSGHARIGQMKHARAMFNEMPEKTTVSWTAMISGYTQIGCYGEALDFFWKMQKMSVQPDDISILSVLPACAHLGALEAGKWIHFYADKNGFLKTRQICNALIEMYIRCGCLDRGWELFNQMPEKDVISWSTMILGFANHGKAQQAIELFEEMQRSKIKPNAITFLGLLSACSHAGLWKEGLNCFHSMKRDFRVDQEIEHYGCLIDLLGRTGHFDHALDIIKTMPMKPDSKIWGSLLSSSRIYSNLEIANMAMNRLMEFEPDDAGNYVLLANIYADLRKWDGMSRIRKLMRSKSMKKTPGCSMIEVNNMVQEFLSSDISKPFTGQILWMIELLSFDPNGADEIDLTVMEV 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 487882 493717 - BLOR08555 Blo18g00067 73371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00067 920 Pfam PPR repeat 567 594 IPR002885 -
Blo18g00067 920 Pfam PPR repeat 770 795 IPR002885 -
Blo18g00067 920 Pfam PPR repeat 538 564 IPR002885 -
Blo18g00067 920 Gene3D Tetratricopeptide repeat domain 649 766 IPR011990 GO:0005515
Blo18g00067 920 Gene3D Tetratricopeptide repeat domain 767 895 IPR011990 GO:0005515
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 668 697 IPR002885 -
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 597 630 IPR002885 -
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 698 732 IPR002885 -
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 464 490 IPR002885 -
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 567 593 IPR002885 -
Blo18g00067 920 TIGRFAM PPR: pentatricopeptide repeat domain 538 565 IPR002885 -
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 695 IPR002885 -
Blo18g00067 920 Gene3D Transferase(Phosphotransferase) domain 1 127 346 - -
Blo18g00067 920 Gene3D Tetratricopeptide repeat domain 404 510 IPR011990 GO:0005515
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 563 IPR002885 -
Blo18g00067 920 Gene3D Tetratricopeptide repeat domain 516 648 IPR011990 GO:0005515
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 594 IPR002885 -
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Blo18g00067 920 SMART serkin_6 73 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00067 920 ProSiteProfiles Protein kinase domain profile. 73 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00067 920 SUPERFAMILY TPR-like 575 852 IPR011990 GO:0005515
Blo18g00067 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
Blo18g00067 920 SUPERFAMILY Protein kinase-like (PK-like) 80 336 IPR011009 -
Blo18g00067 920 Gene3D Phosphorylase Kinase; domain 1 60 153 - -
Blo18g00067 920 Pfam PPR repeat family 461 509 IPR002885 -
Blo18g00067 920 Pfam PPR repeat family 695 743 IPR002885 -
Blo18g00067 920 Pfam PPR repeat family 595 642 IPR002885 -
Blo18g00067 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Blo18g00067 920 Pfam E motif 813 875 IPR046848 -
Blo18g00067 920 Pfam Protein kinase domain 82 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00067 920 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 396 908 - -
Blo18g00067 920 PANTHER OS05G0439300 PROTEIN 396 908 - -
Blo18g00067 920 MobiDBLite consensus disorder prediction 1 34 - -
Blo18g00067 920 CDD PKc_CLK 60 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00067 - - - qsu:112004410 712.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00050 Blo-Chr4:445124 Blo18g00067 Blo-Chr18:487882 3.40E-18 dispersed
Blo11g00532 Blo-Chr11:4921489 Blo18g00067 Blo-Chr18:487882 1.91E-128 dispersed
Blo18g00067 Blo-Chr18:487882 Blo04g00902 Blo-Chr4:10597884 2.87E-135 dispersed
Blo18g00067 Blo-Chr18:487882 Blo15g00246 Blo-Chr15:2571207 1.66E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84811 PF00069 Pkinase 2.00E-40 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00067 Blo_Chr18 FPKM 3.236 2.5771 5.14357 5.638492 8.478491 8.22691 8.87076 8.052246 7.195713 6.9821