Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00068 ATGGCGTCTGGTTCGCCCCGGACAAGAATCGATCAGTTTTATGCTTCGAAGAAAAGAAAACATATATCTCCTGGTTTGAAGTCCGGTAGAAACGAGGAAGATGCTAAAACAACCGTAGAGGTGTCTATTGGCGCCAAAGCTACTTTGGATAATTACTTGGTGACTTCTCCGGACAAAAGATGCAGTGAAATCACTTCTTTCGCACCTTCCAGTTTATCGGCTGGGGAAGATGTCGTCAAAAGAAGTTTGTCAGAGGAGATTAGTGGTCCCTTAAAGAATGAATTAGCTGAATTGCGCTTTCAGCCATCTGCAGCAATTGAAGAAAAACAGTGCGGAAAATTCGATGGCATATCCGATGCAGGCAGTATAATCATTGGAGATGTTTCTAATAAATTCTCTGTTGATAAGTGCGCAGAAAATCCAGAAGTAAAACAATTTGCAGCTGACTTTTTGTCTTTGTACTTTAGAGGTGAGTTTCAAGCTAATGTTACTTCAGCATTAGAGCAAAGAGGCACGGATCATAAGAGGCGCTGTAGCCCATCTATGCCAGCAGAGGAAGTCAAGGCATGTAAGAAGAGACTTGTTAATACCAATCAATTCCACGGAGACAGCAGAACTTGTTCATTAATTGAGGTAAGCAATGAAAAACTGCAGTCTGATGTTGTTGTTTGTGGAACTGTTAGCTATGTTCCGGTGGAGCTCAAAGGAGGCTTGAAAAAATGCAAAAATACTACCAAATTATCTGCTTCTACGTCAGAATGTCAAACACCAGGGTCATCAATTATGAAAGCTTCTTCTCGTCAAACTCCCAAATCCACTTGTGGAGTGTCTATATTTTCTCCAGGAGAAGCTTTCTGGAATGAAGCAATCGAAGTTGCAGATGGTTTATATGCCCCAACTGTTAACTTTTCAGCTCCTGTTGCTGAAGATACTCATACTTTGCAGTATCAGCATGATGTAAAAAGCTGCTGTTCATTGGAAAATGGACATTGTGATAACAAGGTAAAAATAATACAGGATGAATGCGCCAGCAATACTCAGCTTAAGGAAGTTGGGGCTTCTGCTGTGTTACTTGGGAAGGATAAAAAAGAAATGAATAACGACAAATCCCCACTTCCAGTCAAACATTTTGACTTTTCTGGAGAGGGAAAAAACTTGGGTAAAAGTAATCCACTTTGTTACGGTTCAAATTATATAAAAGTCTTTCATCACAGGGGAAATGAAAGCTCTGAACATGATTTTGTACGTTATAAAAGTTCACAAGAGACTAACGTCGAAATTGGTTCTGGTAAATTTGGAACTAATGGAAATAAAGTTCAACTTAGTACCCCTGTACCTAGTGTAACAATAGGGCAGTGGGACGTTGCTGGTCAACTTGATGAACTTAAAGATTCACGTAGTAATCATGAGACTGACCCACAAACGCCTTCAAGTTTTGTGGGAGTGGCTAATCATCTAGATCTCAGTAGTTGGCTGCCATCTGAAATTTGTAGCACGTACAGAAAGAAAGGAATTACAAAACTGTATCCTTGGCAGGTTGAATGCCTTTTGGTGGATGGTGTTTTGCAGAAAAGGAATCTTGTGTATTGTGCATCAACGAGTGCTGGAAAAACTATTGTTGCTGAGATTATAATGTTGCGGCGGGTGATATCTACTGGAAAAATAGCACTTCTTGTATTGCCTTACGTTTCAATATGTGCAGAAAAGGCAGAATATTTAGAGATTCTTCTTGGACCACTTAACAAGCATGTTCGGAGTTATTATGGGAACCAAGGTGGTGGAATGCTTCCTAAAGACACGGCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCATTAATAAACAAATTGTTGGAAGAGGGTCGTTTGTCAGAGATTGGAATTATTGTGATAGATGAACTACACATGGTCGGGGATCAGAATAGGGGTTATCTATTAGAGCTCTTGTTGACAAAGCTTCTATATGCAGCTGGTGAAGGAAACTCAGAATCTACTGGTGAAAGCCCTGGATCAAGTAGTGGTAAGGCTGATCCTGCTAATGGACTGCAAATTGTTGGCATGAGTGCCACCATGCCAAATGTGGCTGCCGTAGCTGATTGGCTTCAGGCAGCTTTATATCAGACTGACTTCCGTCCTGTTCCATTAGAGGAATATATTAAAGTTGGTAATGTCATTTACAGCAAGAAAATGGATGTTGTTAGAACAATATCAAAAACAGCTGACATTGGTGGCAAGGATCCAGATCATGTCATAGAATTGTGCAATGAAGTTGTTCAGGAAGGTCATTCGGTATTAATCTTTTGTTCAAGTAGAAAAGGATGTGAATCAACTGCAAGACATGTTTCAAAGTTTATCAAGAAGTTTTCTACCAATGTTGTCAATGGTAATTGCGAAATTGTTGATATTGCTTCTGCGATTGATGCATTGAGGAGTTCTCCTGCTGGACTTGATCCTGTACTAGAGGAAACTCTTCCTTTGGGAGTTGCTTATCACCATGCTGGCCTTACAGTTGAAGAAAGAGAAGTTGTTGAAACTTGCTATCGTAGTGGTGTTTTACGTGTCTTAACTGCTACATCTACCTTAGCTGCTGGGGTTAATCTTCCAGCAAGAAGGGTCATTTTTCGACAACCTAGGATTGGTCGTGATTTTATTGATGGGACAAGGTATAGACAGATGGCTGGTCGTGCTGGACGAACTGGAATAGATTCAAAAGGAGAGAGTATATTGATATGCAAACCAGAGGAGATCAAAAGAATCAATGTGCTTGTGAATGAAAACTGTCCACCATTACATTCTTGTTTATCTGAGGATAAGAATGGAATGATACATGCAATTTTAGAAGTCGTAGCTGCTGGAATTGTTCAAACAACTAATGATATTCATCGATATGTAAAGTGTACTCTTCTAAATTCTACAAAACCATTTCAAGATGTGGTGAAATCAGCTCAAGAATCTCTTCGATGGTTGTGCCATAAGAAATTTCTTGAATGGAATGAAGCTACTAAGTTATACAGTACTACACCTCTTGGACGAGCAGCTTTTGGCAGTTCTTTGAATCCTGAAGAGTCACTTGTTGTCTTGGATGATCTTTTAAGGGCTAGAGAAGGCTTTGTGTTAGCATCTGATTTGCATGTAGTATATTTGGTAACACCTGTCAATGTTGAAGTAGAGCCAAATTGGGAATTATACTACAAACAGTTCATGGAATTGTCGACCCTTGATCAGTCAGTTGGTAATCGAGTTGGAGTTGCTGAGCCATTCTTGATGCGTAGGGCTCATGGGGCGCCTATGTGCTCTTCAAAAAATTCAACAAGTAGGGTGAAATGGTTTAATGGGAAGGGTCAGAACCAACATGGGTTTATAAGTAATACAAATCTTTCCGAGGAGCAGTCTCTTCGAATATGTAAACGGTTCTATGTTGCACTCATCTTGTCAAGGCTTATTCAGGAAGCTCCTGTACGTGAAGTTTGTGAAGCTTTTAAAGTGGCTAGAGGTATGGTACAAGCCTTACAAGAGACCGCTGGAAGATTTGCAGCCATGGTTTCTGTATTCTGTGAGAGGCTAGGATGGAATGATATGGAAGGCTTGGTAGTTAAGTTTCAAAATCGTGTTTCGTTTGGAGTGAGAGCAGAGATTGTAGAGCTTACAACTATTCCATATGTTAAGGGTTCTCGAGCTAGAGCACTTTATAAAGCTGGTCTACGCACACCTCTTTCAATTGCTGAAGCATCCATTGCAGATATAGTTAAAGCTCTTTTTGAATCTTCATCATGGACTGCACAAGAAAGTTCGGCAAAAAAAGGCATGCAAATAGGAATGGCAAAGAAGATTAAGCACGGTGCAAGGAAAATTGTTCTCGATAAAGCAGAGGAGGCTAGGATTGCTGCTTTCTCAGCCTTCAAATCATTGGGGTTAGATGTCCGTCAAATTCCTGAACCTCTACCAACTTCTCCCTTAAGCATTGACAATAACAATAACGTTGGAGGTGTTGAAGAAAGGCATCATTCCAATTTAGTTTTAGAAAGTGAAGAGGGGATAAGAAAAGCATCAAATATTGAACTGCCAATTTCAGAAGAAATGACCCCCACCATTGACACTCGACATGATGTTCGTGTTGAAAATTGTCAATTGGCCATTGAAAACTCTGTAGTCTCTGATCTCTTGGGGAAACAGAGTGATGGAAACCATATTAGTGTCTGCAATTTTGATGATGAACGACAGGAACAAGGCAGTAACAAAACTTTATATCCTGCCGATGGGGATGGTAATACTGTGAAAGGTCCTATAAACGCTAGTAGCACTCCTGGTGGGTTTGATGCTTTTTTAGATCTCTGGGACATGACTCAGGAATTTTATTTTGACATCCATTATAACAAACGATCTGGAATGAACTCTGTTACCCTCTTTGAAATACAGGGTATAGCTATATGTTGGAAAGATTCTCCTGTGTACTACATTAATCTTCCTAAGGATCTGCTATTAATCAAAGAAATAATGGGGAAAAGAAATGTTCCAAAGTTTACTTGGAATTTGAAAGTTCAAATTCACGCGCTTAAGAATCCTACAGTCACGAACCAGAAACTGGGTTGCCTTAATTCTGCTAAGAAAAAAAGTGTTGGTCTTGAACTCCTTAATGGATCATATTTTATGTTGTCTCCTGTTTATGTGAGACATGGAGTTGATATCTGCATTGTTGCTTGGATACTTTGGCCGGATGATGAAAGGAGCTCAAACCCAAACTTAGAGAAGGAAGTTAAGAAGAGGTTGTCTAGAGAGGCCGCTGCAACTACCTACCGAAAGGGCCAATGGAAAAATCAGATGACAAGAGCGTCACATAATGGCTGTTGCCGTCGTGTTGCCCAAACAAGAGCTTTATGTTCTGTTCTATGGAAATTAGTAATATCTGAAGAGCTTGTAGAAGCACTCATGAATGTTGAGGTCCCACTGGTCAATGTGCTTGCAGATATGGAGCGGTATGGTATAGGAGTTGACATGGAAGGTTGCCTTCAGGCTCGTCGATTATTGGGGAGAAAGCTACGGTGTCTAGAGACAGAAGCTTATAAGCTAGCTGGCATGACTTTTTCGTTGTATACTGCGGCAGATATTGCAAATGTCCTGTATGGACACTTGAAACTTTGCAAACCTGAGGGTCACAATAAAGGGAAGCTTCATCCCAGTACTGACAAGCGTTGTTTGGATTTATTGAGGCATGAGCATCCTATTGTTCCTGTTATCAAAGAACATAGGACCTTGGCAAAACTTTTTAATTGTACATTGGGTTCGATTTGCTCCCTGGCAAGGTTATCTCCAATGACTCAAAAGTACACTCTACATGGTCATTGGCTCCAAACATCAACAGCAACTGGCCGACTTTCAATTGAGGAACCTAACCTTCAGTGTGTTGAGCATATGGTTGACTTTGAAATGACCAATGATAACAATGGAGGGGGCATCAACCAACACAAAATTAATGCACGAGATTTCTTTGTACCTACTCAGGAAAATTGGTTACTGTTAACAGCAGATTATTCTCAGATAGAGTTACGGCTGTTGGCACATTTTTCAAAGGACTCATCATTACTTGAACTGCTTAATAGGCCTGGTTGTGATATATTTACCATGATAGCAGCTAGATGGACAGGGAAACCAGAAGTTTCTGTTGATTCTGTGGAGAGAAATCAAACCAAAGGGTTGGTTTACGGCATGCTTTATGGCATGGGTTCCAAAACACTTGCTGAGCAATTGGAATGCAGCATTGACGAAGCTGCTGAAAAAATTCAAAACTTCAAGAGTTCGTTTCCAGATGTTACTTCATGGCTTCATCAAGCAATTGATTCTTGCCGTGACAAGGGACACGTGAAAACTCTCAATGGAAGAAAGCGCTTCTTATCAAAAATTAAATTTGGGAACAAAAAAGAAAAATCAAAAGCTCAGAGGCAAGTTGTGAATTCAATATGTCAGGGATCTGCTGCTGACATAATAAAGATTGCTATGATTAACCTGTACTCTGTAATTGATGGAGAATGTGATGTGCCAGATTATATCTCATCACATGCAACCAAATTTCACATGCTAAGGAATCAATGCCGGATTTTATTACAGGTACATGACGAATTAGTTCTGGAAGTTCATTCTTCTGTGATAAAGGAAGCAGCGTTGTTGCTACAAATTTGCATGGAAAATGCTGCTTCACTTCTTGTTCCTTTGCAAGTCAAACTTAAAGTTGGAAGAACGTGGGGTTCCTTGGAGCCTTACACATCTGAAGGATAG 6270 40.21 MASGSPRTRIDQFYASKKRKHISPGLKSGRNEEDAKTTVEVSIGAKATLDNYLVTSPDKRCSEITSFAPSSLSAGEDVVKRSLSEEISGPLKNELAELRFQPSAAIEEKQCGKFDGISDAGSIIIGDVSNKFSVDKCAENPEVKQFAADFLSLYFRGEFQANVTSALEQRGTDHKRRCSPSMPAEEVKACKKRLVNTNQFHGDSRTCSLIEVSNEKLQSDVVVCGTVSYVPVELKGGLKKCKNTTKLSASTSECQTPGSSIMKASSRQTPKSTCGVSIFSPGEAFWNEAIEVADGLYAPTVNFSAPVAEDTHTLQYQHDVKSCCSLENGHCDNKVKIIQDECASNTQLKEVGASAVLLGKDKKEMNNDKSPLPVKHFDFSGEGKNLGKSNPLCYGSNYIKVFHHRGNESSEHDFVRYKSSQETNVEIGSGKFGTNGNKVQLSTPVPSVTIGQWDVAGQLDELKDSRSNHETDPQTPSSFVGVANHLDLSSWLPSEICSTYRKKGITKLYPWQVECLLVDGVLQKRNLVYCASTSAGKTIVAEIIMLRRVISTGKIALLVLPYVSICAEKAEYLEILLGPLNKHVRSYYGNQGGGMLPKDTAVAVCTIEKANSLINKLLEEGRLSEIGIIVIDELHMVGDQNRGYLLELLLTKLLYAAGEGNSESTGESPGSSSGKADPANGLQIVGMSATMPNVAAVADWLQAALYQTDFRPVPLEEYIKVGNVIYSKKMDVVRTISKTADIGGKDPDHVIELCNEVVQEGHSVLIFCSSRKGCESTARHVSKFIKKFSTNVVNGNCEIVDIASAIDALRSSPAGLDPVLEETLPLGVAYHHAGLTVEEREVVETCYRSGVLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDSKGESILICKPEEIKRINVLVNENCPPLHSCLSEDKNGMIHAILEVVAAGIVQTTNDIHRYVKCTLLNSTKPFQDVVKSAQESLRWLCHKKFLEWNEATKLYSTTPLGRAAFGSSLNPEESLVVLDDLLRAREGFVLASDLHVVYLVTPVNVEVEPNWELYYKQFMELSTLDQSVGNRVGVAEPFLMRRAHGAPMCSSKNSTSRVKWFNGKGQNQHGFISNTNLSEEQSLRICKRFYVALILSRLIQEAPVREVCEAFKVARGMVQALQETAGRFAAMVSVFCERLGWNDMEGLVVKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLSIAEASIADIVKALFESSSWTAQESSAKKGMQIGMAKKIKHGARKIVLDKAEEARIAAFSAFKSLGLDVRQIPEPLPTSPLSIDNNNNVGGVEERHHSNLVLESEEGIRKASNIELPISEEMTPTIDTRHDVRVENCQLAIENSVVSDLLGKQSDGNHISVCNFDDERQEQGSNKTLYPADGDGNTVKGPINASSTPGGFDAFLDLWDMTQEFYFDIHYNKRSGMNSVTLFEIQGIAICWKDSPVYYINLPKDLLLIKEIMGKRNVPKFTWNLKVQIHALKNPTVTNQKLGCLNSAKKKSVGLELLNGSYFMLSPVYVRHGVDICIVAWILWPDDERSSNPNLEKEVKKRLSREAAATTYRKGQWKNQMTRASHNGCCRRVAQTRALCSVLWKLVISEELVEALMNVEVPLVNVLADMERYGIGVDMEGCLQARRLLGRKLRCLETEAYKLAGMTFSLYTAADIANVLYGHLKLCKPEGHNKGKLHPSTDKRCLDLLRHEHPIVPVIKEHRTLAKLFNCTLGSICSLARLSPMTQKYTLHGHWLQTSTATGRLSIEEPNLQCVEHMVDFEMTNDNNGGGINQHKINARDFFVPTQENWLLLTADYSQIELRLLAHFSKDSSLLELLNRPGCDIFTMIAARWTGKPEVSVDSVERNQTKGLVYGMLYGMGSKTLAEQLECSIDEAAEKIQNFKSSFPDVTSWLHQAIDSCRDKGHVKTLNGRKRFLSKIKFGNKKEKSKAQRQVVNSICQGSAADIIKIAMINLYSVIDGECDVPDYISSHATKFHMLRNQCRILLQVHDELVLEVHSSVIKEAALLLQICMENAASLLVPLQVKLKVGRTWGSLEPYTSEG 2089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 495677 509629 + BLOR08556 Blo18g00068 73372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00068 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 914 IPR027417 -
Blo18g00068 2089 CDD DEXHc_POLQ-like 492 712 - -
Blo18g00068 2089 Pfam DNA polymerase family A 1668 2080 IPR001098 GO:0003677|GO:0003887|GO:0006260
Blo18g00068 2089 Gene3D - 1846 1990 - -
Blo18g00068 2089 Gene3D - 490 712 IPR027417 -
Blo18g00068 2089 SMART ultradead3 504 718 IPR014001 -
Blo18g00068 2089 Gene3D Taq DNA Polymerase; Chain T, domain 4 1659 1769 - -
Blo18g00068 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 941 IPR001650 -
Blo18g00068 2089 SMART polaultra3 1822 2047 IPR001098 GO:0003677|GO:0003887|GO:0006260
Blo18g00068 2089 MobiDBLite consensus disorder prediction 1 36 - -
Blo18g00068 2089 Gene3D - 1786 2079 - -
Blo18g00068 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 518 709 IPR014001 -
Blo18g00068 2089 SUPERFAMILY Sec63 N-terminal domain-like 1133 1245 - -
Blo18g00068 2089 PRINTS DNA-polymerase family A (pol I) signature 1777 1799 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 PRINTS DNA-polymerase family A (pol I) signature 1929 1940 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 PRINTS DNA-polymerase family A (pol I) signature 1951 1962 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 PRINTS DNA-polymerase family A (pol I) signature 2030 2043 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 PRINTS DNA-polymerase family A (pol I) signature 1892 1917 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 CDD SF2_C_Ski2 711 912 - -
Blo18g00068 2089 Gene3D - 1097 1231 - -
Blo18g00068 2089 CDD DNA_pol_A_theta 1660 2082 - -
Blo18g00068 2089 PANTHER DNA POLYMERASE THETA 508 2087 - -
Blo18g00068 2089 Gene3D - 1433 1658 IPR036397 GO:0003676
Blo18g00068 2089 PANTHER DNA POLYMERASE I 508 2087 IPR002298 GO:0003887|GO:0006261
Blo18g00068 2089 Pfam Helicase conserved C-terminal domain 748 900 IPR001650 -
Blo18g00068 2089 Pfam DEAD/DEAH box helicase 520 693 IPR011545 GO:0003676|GO:0005524
Blo18g00068 2089 Pfam Helix-turn-helix domain 905 996 IPR046931 -
Blo18g00068 2089 SUPERFAMILY DNA/RNA polymerases 1638 2082 IPR043502 -
Blo18g00068 2089 SMART helicmild6 818 900 IPR001650 -
Blo18g00068 2089 Coils Coil 1912 1932 - -
Blo18g00068 2089 Gene3D - 720 920 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00068 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7] - jre:109009529 2582.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00818 Blo-Chr10:25913104 Blo18g00068 Blo-Chr18:495677 1.78E-16 dispersed
Blo16g01143 Blo-Chr16:39953800 Blo18g00068 Blo-Chr18:495677 4.48E-16 dispersed
Blo18g00068 Blo-Chr18:495677 Blo11g00853 Blo-Chr11:15539226 5.33E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007306 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00068 Blo_Chr18 FPKM 0.89644 1.118167 9.813926 9.981162 80.872223 86.513901 78.723785 4.215236 3.89491 4.41071