Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00091 ATGCCGAGTGACAAAACAGTTGGCGGAGGCGATGACGCCTTCAATACTTTCTTCAGTGAAACTGGTGCGGGGAAGCATGTTCCTCGTGCCATTTTTGTGGATCTTGAACCAACTGTGATCGATGAAGTGAGGAGTGGATCATACCGCCAACTTTTCCATCCTGAACAGCTCATCAGTGGCAAGGAAGATGCTGCCAACAACTTTGCCCGTGGGCACTATACAATTGGGAAAGAGATTGTCGACCTCTGCCTGGATAGGATCAGAAAGCTTGCAGACAACTGCACTGGTCTCCAGGGTTTTTTGGTTTTCAATGCAGTTGGTGGTGGTACGGGTTCGGGACTTGGCTCACTTCTCCTTGAGCGACTCTCTGTTGATTATGGAAAGAAGTCAAAGCTTGGTTTTACTGTCTATCCTTCACCACAGGTTTCTACTTCCGTTGTGGAACCCTATAATAGTGTTCTGTCAACCCACTCTCTCCTTGAGCATACAGATGTTTCTGTGCTTCTCGACAATGAGGCCATCTATGACATTTGTCGGCGGTCACTTGACATCGAGCGGCCCACCTACACCAATCTCAATCGCCTTGTCTCTCAGGTTATTTCATCCCTCACTGCCTCCTTAAGGTTCGATGGTGCTCTCAATGTTGATGTCACTGAGTTTCAGACGAACTTGGTTCCCTACCCCCGAATCCACTTCATGCTTTCTTCGTATGCTCCTGTCATCTCTGCTGAGAAGGCGTATCATGAGCAACTGTCGGTATCTGAAATCACCAACAGTGCTTTTGAACCTTCTTCCATGATGGCTAAATGTGATCCAAGACATGGAAAATACATGGCTTGCTGCTTGATGTACCGAGGTGATGTCGTTCCCAAGGACGTCAATGCAGCCGTGGGGACCATTAAAACCAAGCGAACCATCCAGTTTGTAGACTGGTGTCCAACTGGATTCAAGTGTGGTATCAATTACCAGCCACCCACTGTAGTTCCAGGGGGTGACCTTGCTAAGGTGCAGAGGGCCGTGTGCATGATCTCCAACTCAACAAGTGTAGTAGAAGTCTTCTCCCGCATTGACCACAAGTTTGATCTTATGTATGCTAAGCGTGCTTTTGTGCACTGGTACGTTGGTGAAGGGATGGAAGAAGGAGAATTTTCAGAGGCTCGTGAGGATCTTGCTGCTCTCGAAAAGGATTACGAGGAAGTTGGTTTAGAATCTGGTGAGGGAGATGAAGGGGATGAAGGAGAAGATTACTGA 1251 47.88 MPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRSGSYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLESGEGDEGDEGEDY 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 755381 756810 - BLOR08579 Blo18g00091 73395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00091 416 Pfam Tubulin C-terminal domain 228 357 IPR018316 -
Blo18g00091 416 SUPERFAMILY Tubulin nucleotide-binding domain-like 5 209 IPR036525 -
Blo18g00091 416 Coils Coil 383 403 - -
Blo18g00091 416 PRINTS Alpha-tubulin signature 325 344 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 387 403 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 113 125 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 286 307 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 179 191 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 126 137 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 239 254 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 85 93 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 10 23 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 53 66 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 350 366 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Alpha-tubulin signature 312 325 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 99 117 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 345 373 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 73 97 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 118 139 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 157 177 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 60 71 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 143 156 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PRINTS Tubulin signature 18 37 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 PANTHER TUBULIN ALPHA CHAIN 4 415 - -
Blo18g00091 416 Gene3D Tubulin/FtsZ, GTPase domain 1 233 IPR036525 -
Blo18g00091 416 SMART Tubulin_4 14 211 IPR003008 GO:0005525
Blo18g00091 416 Pfam Tubulin/FtsZ family, GTPase domain 12 178 IPR003008 GO:0005525
Blo18g00091 416 Gene3D - 234 348 IPR037103 -
Blo18g00091 416 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 107 113 IPR017975 GO:0005525|GO:0005874|GO:0007017
Blo18g00091 416 Gene3D Helix hairpin bin 349 401 IPR023123 -
Blo18g00091 416 CDD alpha_tubulin 1 400 - -
Blo18g00091 416 PANTHER TUBULIN 4 415 IPR000217 GO:0005874|GO:0007017
Blo18g00091 416 SUPERFAMILY Tubulin C-terminal domain-like 211 400 IPR008280 -
Blo18g00091 416 SMART Tubulin_C_4 213 358 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00091 K07374 TUBA; tubulin alpha - pda:103704256 778.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00080 Blo18g00091 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00091 Blo-Chr18:755381 Blo06g01126 Blo-Chr6:34730980 1.69E-113 dispersed
Blo17g00080 Blo-Chr17:598165 Blo18g00091 Blo-Chr18:755381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g577 . . Bda01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00080 Blo18g00091 . . Bpe02g01727 Bpe14g00506 Bma01g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168