Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00096 ATGGAACTTAATGAACTGTTACTCTCAGTGAGAAGAGACGTTTTGGAGGATCCCATTCCCATAGAGATGAACGACCTTTTCTCGGCTGACTGGAGCTTCGATCCATTTTATCAAACCCCTCCCAGTTTTCTTCCACATTCGTTCGAACAAAACTTCACCAACTTTCAGCTGTTGGACCAACAAGCCTACTGCTACCCTTCAGCTAGTGATTTATCAGCTCTGCAAAAAGATGGCTCTTTCCATCATACCCTTCTCACAGCCCCGATTTCTAATCTGGACGACGAAGGTGAACTCTGTCCACTTCCCTTTGAAGCCTCTTGCAAAGTGGAAGCAGTTCCAACACCAGAAGGGAACGTTCTGACGAAGAAGTCGCAGAGAAAGCCATCGAAGAATCTGATGGCCGAGCGAAGACGAAGAAAGCGACTGAATGACAGGCTGACTATGCTAAGATCCATTGTCCCTAAGATTAGCAAGCGAATGTTAATCCGAGTTTTTCCTCTAAATCTCCGAATGTTGGTACTAATGGAGGTGGAAGAAAGAAATGGCGAAACTCGGATTGCGATTTGCTGCTCAGGAAAGCCTGGTTTATTGTCATTAACAGTGAATATCCTTGACACTTTAGGACTTGAGGTTAAAGAGTGTGTGATTAGCTCCTTCAACGATTTCACAATGCATGCTTCTTGTTCGCAGGTCTGGTTTGACTTGACTAGTTCGATTCGGTTTGACTTGGACCGGTTCAATTCAGTTCGGTTGTACCGGTTCGATTCGATTCGGCTTAAGGCTCTGAACCCTAACTCATCTTCTTCACCTCCTTCGTTCTTCTTCTTCGTTGCAATGGGAGAGCTCCTTCTCTCTGCTTTGTCGTTGATAGGGATGAAAGTTCGTTGTCTAGTATGGGTTTGTCCAAGTGAGGGTGAAGGTTTTGGTCCGAGTGAAACTGATAGGTTCCAAGAAACACTTAGAAAGACTTAG 972 44.96 MELNELLLSVRRDVLEDPIPIEMNDLFSADWSFDPFYQTPPSFLPHSFEQNFTNFQLLDQQAYCYPSASDLSALQKDGSFHHTLLTAPISNLDDEGELCPLPFEASCKVEAVPTPEGNVLTKKSQRKPSKNLMAERRRRKRLNDRLTMLRSIVPKISKRMLIRVFPLNLRMLVLMEVEERNGETRIAICCSGKPGLLSLTVNILDTLGLEVKECVISSFNDFTMHASCSQVWFDLTSSIRFDLDRFNSVRLYRFDSIRLKALNPNSSSSPPSFFFFVAMGELLLSALSLIGMKVRCLVWVCPSEGEGFGPSETDRFQETLRKT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 810869 817025 - BLOR08584 Blo18g00096 73400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00096 323 Gene3D - 118 207 IPR036638 GO:0046983
Blo18g00096 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 158 - -
Blo18g00096 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 174 231 - -
Blo18g00096 323 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 97 158 - -
Blo18g00096 323 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 174 231 - -
Blo18g00096 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 207 IPR011598 GO:0046983
Blo18g00096 323 Pfam Helix-loop-helix DNA-binding domain 132 154 IPR011598 GO:0046983
Blo18g00096 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 157 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00741 Blo18g00096 CCT
Blo01g01790 Blo18g00096 CCT
Blo17g00087 Blo18g00096 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00096 Blo-Chr18:810869 Blo16g00289 Blo-Chr16:6960858 5.85E-10 dispersed
Blo01g01790 Blo-Chr1:57630646 Blo18g00096 Blo-Chr18:810869 4.02E-24 wgd
Blo12g00741 Blo-Chr12:25767279 Blo18g00096 Blo-Chr18:810869 1.92E-07 wgd
Blo17g00087 Blo-Chr17:677593 Blo18g00096 Blo-Chr18:810869 1.34E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13563 PF00010 HLH 2.20E-05 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00096 - - tcc:18591864 173.711