Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00098 ATGAGAGATGTACCTCGCTCGATTCAACGGCCAAGCAATGTCGTCAGTCCGTCGCCTTTGGAAGATGCTAGATTCAATCATGGCCGTACATTCCGAGATCTAACGACCAATGAGCTTCGTCTCCGCCATCACTCTTCTTCTTCGAATTGTTATGAGGGACGATACTTGACATTCTTCGTCTCCGTTCGACGCGCAGCTGCCCAAGAGAAAGAAAAAGCTCAGGCATCTTGGATAGAGCACCTGAATGCTCCGCTTGAGGTGATAGATCCGGAAATGGCTGACATTATTGAGCTTGAGAAAGCTCGTCAATGGAAGGGACTTGAGCTCATACCTTCAGAGAATTTTACCTCATTATCAGTAATGCAAGCTGTTGGGTCAGTGATGACTAATAAATACAGTGAAGGATATCCAGGAGCCAGATACTATGGCGGAAATGAGTATATTGATATGGCAGAGTCTTTATGTCAGAAGCGGGCATTAGAAGCATTTCAGTTGGACCCTGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGTTCCCCTGCAAACTTCCAAGCATATACTGGACTGTTAAAACCTCATGAGAGGATTATGGCTCTTGATTTGCCACATGGTGGTCATCTTTCGCATGGTTATCAGACAGATACCAAGAAGATATCTGCTGTGTCAATATTCTTCGAGACCATGCCGTATAGGTTGAATGAGACCACAGGTTACATTGACTATGAACAGTTGGAAAAAAGTGCTACACTTTTCCGTCCAAAACTCATTGTTGCTGGTGCAAGTGCGTATGCTCGTCTTTATGACTACGGGCGCATCCGCAAGGTATGTGACAAGCAGAAAGCTATTATGTTGGCTGATATGGCTCATATTAGTGGTTTGGTTGCTGCGGGTGTCATTCCATCTCCTTTTGAATATGCTGATATAGTGACTACAACAACACACAAGTCACTCCGCGGCCCGCGTGGGGCTATGATTTTTTTCAGGAAGGGGGTGAAGGAGATTAACAAGCAAGGGCAAGAAGTGTTTTATGATTATGAAGACAAAATTAATCAAGCTGTGTTTCCTGGACTTCAAGGTGGTCCACACAACCACACTATTGCTGGTTTGGCAGTCGCACTGAAACAGGCAACCACTCCGGAGTACAAAGCCTACCAAGAGAAAGTTCTTCATAATTCCTCAAAATATGCTCAGAGTTTAATTGAGATGGGCTATGATCTTGTATCTGGTGGAACTGATAACCATTTGGTCTTGGTGAATTTGAAAAACAAGGGTATTGATGGCTCCAGAGTTGAAAAGGTTCTAGAGGCAGTTCATATAGCAGCCAATAAAAATACTGTTCCAGGCGATGTATCTGCTATGGTTCCGGGTGGCATCCGAATGGGGACCCCTGCTCTCACTTCAAGAGGGTTTATTGAGGAAGATTTTGTTAAAGTAGCCGAATTCTTTGATGCAGCTGTGAAGTTGGCCTTGAAGATCAAGGCACTCACCAAAGCGGTCAATGGCACTCTCAAGCTCGACTCTGAGTTAAGAAAACAGCATCCCTCCACCTTCCTCTCCGTCGAGAAGAATTCAAGCTTTGCACATCAAAAAAGCCAAGCAGTAACTCATTTGGAGAGAATATCGGAGCCGAGGCATCTGGACTTCCACAAAGCTCTTTCTTTGATAAAAGAGAATAAGGCGGCCGATCCGTCTCCATATATTCCCTTACTGGAAGAATGTATGAACAGAAATTCGGCTTTTGAAACAGAAGCTATTCATTCTCATATCATTAAAAAAGGAATCCACGAAGAACTATTTCTCATGACATTCCTGGTGAATGTTTATGCGAAATGCGGTAACATGGAATATGCCCGCAAAGTTTTCGACAATTTGCTGAGGAGAAATGTTGTTGCCTGGACAACCCTAATGACAGGATATGTTCACCAATTGCAGCCACAGGTTGCAATTGAAGTTTTCCTCGAAATGTTAGATGCAGGGGCTTATCCAACAAACTACACTCTGGGAATTGTTCTAAGCGCATGCACTTCCTCAAACTCCACTGAATTTGGGAGGCAAATTCATGCCTACATTATTAAATACCACCTTGATTTTGACACTAGTATTGGGAACTCTCTTTCAAGCTTTTACTCTAAAATCCGGAAGTTGAAATCTGCCCTAAAATCGTTTCGGAGGATCCAAGAAAAGAATGTGATCTCTTGGACTGCAGTTATATCGGCTTGTGGGGAAAACGGGGCTGCAGCACAGGGTCTGAGTTTTTTTGCAGAAATGTTGGCTCAAGGCATTGAACCTAATGAGTTCACCTTCACTAGTGTCTTGAGCTTGTGCTGTGTAACGCTGACATTGGGTTTAGGAGCTCAAACTCACTCGTTAAGCCTGAAACTGGGCTATGAATCAAGCTTGCCTGTAAAAAACTCTGTGATGTACTTGTACTTAAAATGTGGATGGATTAATGAGGCTTACAAGGTGTTTGAAGGAATGGAAGTTGTCAATTTAGTGACGTGGAATGCAATGATTGCAGGCTATGCAAAAATGGTGGATTCTAACGATCTCTCAGCATACCGAAAGGGAAATGAAGCCTTGAATATTTTCTTGAAATTGTATCGATCGAATATAAAGCCCGATTTGTTCACATTTTCTAGTGTTTTAACTGTGTGTAGTAGTTTGGTGGCCTTAGAACACGGGGAGCAAGTTCATGCTCAAACCATCAAGACCGGATTTCTGTCCGATGTTGTAGTGGGAACTGCACTTGTTAATATGTATAATAAATGTGGAAGCATCGAAAAAGCGTGTAGGGCTTTCCTTGAGATGTCCACTCGAACTTTAATATCGTGGACTTCGATGATAACTGGATTTTCACAGCACGGACGGTCTCAACAAGCCCTTCAGCTTTTCGAAGACATGTTACTTGCAGGGGTTAGGCCAAACCAGGTGACTTTTGTGGGTGTTTTATCAGCTTGTAGCCATGCCGGAATGGTAGAAGAAGCATTTGGGTATTTCCAACTGATGCAAAAGGAGTATAATATTAGGCCTGTCATGGATCACTTTGCCTGCATGATTGATATGCTTGTGCGATTGGGTCGGCTGGATGAAGCTTTTGATTTCATAAAGAAGATGGATTTTGAGCCTAATGAGTGCATATGGAAGATCTTAGTTGCAGGCTGTAGAATTCAAGGGAATTTAGAACTCGGGTTTTATGCAGCTGAGGAGCTCCTCAAGCTCAAGCCTAGAGATACCGAGACTTACGTCTCGTTGCTGAACATGTACCTCTCGGCAGAGCGGTATACGGATGTTTCTAGAGTGAGAAAGCTGATGAAGGAGGAGAAACTTGGGAAATTGAATGATTGGAGCTGGATTAGCATTCAAAACAGGGTTTGTTCATTTAAACCCAACGATAAGTCCCATTATAACAGTAAAGAGATGTATGAACTATTAGAGAATTTACTTGAAAAAGTCAAGAATCTTGGGTATGAGTCTGTTGAGTGTCTAGAAGTAGAAGAAGAAGAAGAAGCGGAAAATGAAGAAAAAGTTCTTCAATCTGCCGTTCATCACAGTGAAAAGTTAGCCGTTGCTTTTGGCTTGTTGAAATTGCCAAATGCTGCACAGATTCGGGTTATCAAGAGCACCACCATGTGTGGGGACTGCCATAGCTTTTTAAGGTTTGTTTCTGTATTGACTGCTAGAGAAATCATCATCAGAGATGGTAAGAGGCTTCATAAATTTGTCAACGGACAGTGTTCTTGTGGAGATAGCAATTTTGCCTGA 3765 42.79 MRDVPRSIQRPSNVVSPSPLEDARFNHGRTFRDLTTNELRLRHHSSSSNCYEGRYLTFFVSVRRAAAQEKEKAQASWIEHLNAPLEVIDPEMADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFQLDPAKWGVNVQSLSGSPANFQAYTGLLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYEQLEKSATLFRPKLIVAGASAYARLYDYGRIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVFYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQATTPEYKAYQEKVLHNSSKYAQSLIEMGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVKLALKIKALTKAVNGTLKLDSELRKQHPSTFLSVEKNSSFAHQKSQAVTHLERISEPRHLDFHKALSLIKENKAADPSPYIPLLEECMNRNSAFETEAIHSHIIKKGIHEELFLMTFLVNVYAKCGNMEYARKVFDNLLRRNVVAWTTLMTGYVHQLQPQVAIEVFLEMLDAGAYPTNYTLGIVLSACTSSNSTEFGRQIHAYIIKYHLDFDTSIGNSLSSFYSKIRKLKSALKSFRRIQEKNVISWTAVISACGENGAAAQGLSFFAEMLAQGIEPNEFTFTSVLSLCCVTLTLGLGAQTHSLSLKLGYESSLPVKNSVMYLYLKCGWINEAYKVFEGMEVVNLVTWNAMIAGYAKMVDSNDLSAYRKGNEALNIFLKLYRSNIKPDLFTFSSVLTVCSSLVALEHGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIEKACRAFLEMSTRTLISWTSMITGFSQHGRSQQALQLFEDMLLAGVRPNQVTFVGVLSACSHAGMVEEAFGYFQLMQKEYNIRPVMDHFACMIDMLVRLGRLDEAFDFIKKMDFEPNECIWKILVAGCRIQGNLELGFYAAEELLKLKPRDTETYVSLLNMYLSAERYTDVSRVRKLMKEEKLGKLNDWSWISIQNRVCSFKPNDKSHYNSKEMYELLENLLEKVKNLGYESVECLEVEEEEEAENEEKVLQSAVHHSEKLAVAFGLLKLPNAAQIRVIKSTTMCGDCHSFLRFVSVLTAREIIIRDGKRLHKFVNGQCSCGDSNFA 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 827380 835579 - BLOR08586 Blo18g00098 73402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00098 1254 Pfam DYW family of nucleic acid deaminases 1172 1251 IPR032867 GO:0008270
Blo18g00098 1254 SUPERFAMILY TPR-like 602 1097 IPR011990 GO:0005515
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 941 975 IPR002885 -
Blo18g00098 1254 Gene3D - 114 387 IPR015421 GO:0003824
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 681 781 IPR011990 GO:0005515
Blo18g00098 1254 Pfam Serine hydroxymethyltransferase 86 482 IPR039429 -
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Blo18g00098 1254 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 562 1189 - -
Blo18g00098 1254 Gene3D Aspartate Aminotransferase, domain 1 89 499 IPR015422 GO:0003824
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 943 976 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 631 664 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 1016 1040 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 978 1011 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 732 766 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 943 988 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 628 675 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 729 777 IPR002885 -
Blo18g00098 1254 SUPERFAMILY PLP-dependent transferases 77 507 IPR015424 -
Blo18g00098 1254 MobiDBLite consensus disorder prediction 1 21 - -
Blo18g00098 1254 Hamap Serine hydroxymethyltransferase [glyA]. 84 518 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo18g00098 1254 Pfam PPR repeat 805 828 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 1018 1039 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 915 938 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 833 844 IPR002885 -
Blo18g00098 1254 Pfam E motif 1060 1119 IPR046848 -
Blo18g00098 1254 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 308 324 IPR019798 GO:0030170
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 1006 1227 IPR011990 GO:0005515
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Blo18g00098 1254 PANTHER OS01G0913400 PROTEIN-RELATED 562 1189 - -
Blo18g00098 1254 CDD SHMT 89 496 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 782 852 IPR011990 GO:0005515
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 853 1005 IPR011990 GO:0005515
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 545 680 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00098 - - - zju:107427123 1084.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01790 Blo18g00098 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00318 Blo-Chr16:8160594 Blo18g00098 Blo-Chr18:827380 0 dispersed
Blo18g00098 Blo-Chr18:827380 Blo08g00213 Blo-Chr8:2487371 9.85E-15 dispersed
Blo18g00098 Blo-Chr18:827380 Blo01g00337 Blo-Chr1:4032346 1.37E-177 transposed
Blo18g00098 Blo-Chr18:827380 Blo12g00102 Blo-Chr12:7371193 1.49E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00098 Blo_Chr18 FPKM 8.552909 9.304185 6.680039 7.511776 6.470936 5.92125 5.970272 4.74598 4.852468 4.746085