Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00104 ATGAAGCAGAGATTTTTGAAGTTTAAGAGGCATGAATATTTGGAAGAGCCAAAGCACTTCCAAGCTCTAGCCCAAGCACAAGCACCAAAATTTATGGTGATTGCCTGTGCAGATTCAAGGGTATGTCCCTCTAACATACTAAAATTTCAACCTGGTGAAGCTTTTATGATTAGAAATGTTGCAAACATAGTGCCTCAAATGAAGAACGGGCCAACCGAGATCGGTGCTGCCCTCGAATTTGCAGTAAACACTCTTAACGTTGAAAATATATTAGTAATTGGCCACAGTGGCTGTGGAGGAATTCAGACACTTATGAGCATGGAAGAGGATGTTGCTTCCAGCAGCTATATTCATGACTGGGTTTTCAATGCAAAACTTGCCAAACTGAAAACACTGGCCGCAGCTAAGCACCTCAGCTTCGACGGGCAATGTCGATTCTGCGAGAAGGAATCAATCTGCGATTCATTGAAGAACTTGCTAAGTTATCCGTGGATCAAAGAGAGAGTGAGGAAAGGGTCGCTCTCTCTTCATGGAGGTTATTATGATATATCGAATTGTACATTCGAGAAGTGGACGGTTGATATCATCGACGAAACGGATAGATATTCGATCAGAGATCAATCGTTCTGGTGCTAA 636 42.45 MKQRFLKFKRHEYLEEPKHFQALAQAQAPKFMVIACADSRVCPSNILKFQPGEAFMIRNVANIVPQMKNGPTEIGAALEFAVNTLNVENILVIGHSGCGGIQTLMSMEEDVASSSYIHDWVFNAKLAKLKTLAAAKHLSFDGQCRFCEKESICDSLKNLLSYPWIKERVRKGSLSLHGGYYDISNCTFEKWTVDIIDETDRYSIRDQSFWC 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 944900 946449 - BLOR08592 Blo18g00104 73408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00104 211 SUPERFAMILY beta-carbonic anhydrase, cab 2 194 IPR036874 GO:0004089|GO:0008270
Blo18g00104 211 Gene3D Carbonic anhydrase 1 200 IPR036874 GO:0004089|GO:0008270
Blo18g00104 211 PANTHER CARBONIC ANHYDRASE 1 211 - -
Blo18g00104 211 SMART Pro_CA_2 24 192 IPR001765 GO:0004089|GO:0008270
Blo18g00104 211 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 79 99 IPR015892 GO:0004089|GO:0008270|GO:0015976
Blo18g00104 211 PANTHER CARBONIC ANHYDRASE 1 211 IPR001765 GO:0004089|GO:0008270
Blo18g00104 211 CDD beta_CA_cladeB 4 191 IPR045066 GO:0004089|GO:0008270
Blo18g00104 211 Pfam Carbonic anhydrase 32 185 IPR001765 GO:0004089|GO:0008270
Blo18g00104 211 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 36 43 IPR015892 GO:0004089|GO:0008270|GO:0015976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00104 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - cpap:110818722 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00889 Blo-Chr2:34381498 Blo18g00104 Blo-Chr18:944900 2.94E-86 dispersed
Blo18g00104 Blo-Chr18:944900 Blo18g00336 Blo-Chr18:3485932 1.14E-59 dispersed
Blo18g00104 Blo-Chr18:944900 Blo16g01158 Blo-Chr16:40104742 2.56E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g503 . . Bda01g00913 . . . . . . Cmo12g00150 . . . Car12g00178 . . Cpe07g00166 Bhi04g00925 . . . . . . . . . . . . . . . . . . . . . . Blo18g00104 . . Bpe02g01152 Bpe05g00432 Bma01g00979 . . . . Cma12g00197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00104 Blo_Chr18 FPKM 34.753578 39.054146 14.409245 15.271295 5.355371 5.042476 6.487173 59.81419 58.838577 65.064209