Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00106 ATGGCTAATGCTGGTTCTATGCTAGTATCCCGTGAATTAAGAATTCATAATGGCCGTGGATGCTGTAACACATATAATAATGTAATGAGAAAGACTCGAATACATCTTGTTACAATCGATCTCACGTCTCATGGTTTGTCAAATCTAATGATATGTGTTGTGAAGAATTTTCTGTTTGATCCTCAGAAGCAGAATCCATGGACTCTTCAACTTTTAAGAAGAGTACCTGTCCCAGTAGTTCCTGTCTCTTCTAAATGCAATATTTTCTTATGCCAATCTTTTATGGTACCGGGAGGAGGAAGTGGGCCTTCCATTCTAAAATCTGCTACCCTGATATTGACTAGAACATATGATGCTTTATGCGGGAGCCTCCTTATAATTAAATTGTTTCCAGCAATTGGTTTCATTGCTTTTGCTGTTTGGGGTGTTCGGCCTCTCATCCGCTTGAGCAGGAATTTATTTCTCCATAAAACAGATGATAGTTGGAATAAAAGTAATGTTTACTATGTTGCAACTCATTACATTCGTCCGCTGCTGCTTTGGTTTGGTGCTACATTAATCTGCAGGGCATTAGACCCATTAGTCCTACCTTCAGACGTCACCCAAGCTATTAAACAGCGACTTCTTAATTTTGTGCAATCATTGTCAACAATGCTTGTGTTTGCCTATTGTTTATCGAGCTTGATTCAACAGGCTCAGAAGTTCTTCATTGAAACAAATGATTCTGGTGAAGCGAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTCTTCATGGAGTTGCTTGGTTTTTCTACCCAAAAGTGGCTGACTGCTGGTGGTCTCAGCACAGTATTACTCACCCTCGCTGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTACGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATCCCAAACCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCCCATCTTGCCATCAGCCACTTCAACGTCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAATGAAAAATCCTCAAGTTGAGCAGAAAAGATTACACAGAAGAGTTTTCCTGGATTATATTGATCCTGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCCCTCATTGTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGGGTCATCAACCATCACCGCGCCAGGCTCGCTACGCCCATTCGCACAGTTCAGAAAAGTTACAGAGAGGCTGACTTGGATGTATCTTTTGCTGATACCATCCTCTCACAATCTACGGCAGCTAATGATCGTCCTCTCCTACTCATTGAACCGTCATATAAGATGAGCAGTGATGACAAAGTGAAGGCCTTCACTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCGAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCTGACAAAGCTGGATCGTCATCAAATCTTGAAGCCAAAAAAGGCGATAAAAAGGATGAGAGTATGGCGATCAAGTCCACCAACACTACCCCTAAAGGAGTGACATCGGAAAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATAGACACGGCATCAGTTACTTTGCGCATGAAGGAAGAAGGCGAAAAGGGTACTGTATCGACTGCAACATCACTCCCTCCATTGGAAGAGAACATACTTCTAGGTCTTGCACTGGAAGGGTCGAAAAGAACGCTTCCAATTGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATGTCTACCCATCGAACTCCACTTTCCCAAATTAGCAAGGAAGCTCAAGATGCTCAGGTACCAGCAGTTCCTGGAGCGCCCCAAAATGCTTAA 2049 42.31 MANAGSMLVSRELRIHNGRGCCNTYNNVMRKTRIHLVTIDLTSHGLSNLMICVVKNFLFDPQKQNPWTLQLLRRVPVPVVPVSSKCNIFLCQSFMVPGGGSGPSILKSATLILTRTYDALCGSLLIIKLFPAIGFIAFAVWGVRPLIRLSRNLFLHKTDDSWNKSNVYYVATHYIRPLLLWFGATLICRALDPLVLPSDVTQAIKQRLLNFVQSLSTMLVFAYCLSSLIQQAQKFFIETNDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLSTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFNVNKINNVVADMRKVLMKNPQVEQKRLHRRVFLDYIDPENQALMVLVSCFVKTPHCEEYLCVKEAILLDLLRVINHHRARLATPIRTVQKSYREADLDVSFADTILSQSTAANDRPLLLIEPSYKMSSDDKVKAFTRSTSSDEEKEAEQEAASTTDMNASDKAGSSSNLEAKKGDKKDESMAIKSTNTTPKGVTSEKSWAVLPASDSEEIDTASVTLRMKEEGEKGTVSTATSLPPLEENILLGLALEGSKRTLPIEEETPSMFESREMSTHRTPLSQISKEAQDAQVPAVPGAPQNA 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 991140 996434 - BLOR08594 Blo18g00106 73410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00106 682 Pfam Mechanosensitive ion channel 255 462 IPR006685 GO:0016020|GO:0055085
Blo18g00106 682 SUPERFAMILY Sm-like ribonucleoproteins 298 368 IPR010920 -
Blo18g00106 682 MobiDBLite consensus disorder prediction 552 566 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 636 682 - -
Blo18g00106 682 Gene3D - 314 369 IPR023408 -
Blo18g00106 682 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 582 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 536 551 - -
Blo18g00106 682 Gene3D - 209 312 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 515 535 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 651 668 - -
Blo18g00106 682 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 593 672 IPR045042 -
Blo18g00106 682 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 582 IPR045042 -
Blo18g00106 682 MobiDBLite consensus disorder prediction 515 580 - -
Blo18g00106 682 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 593 672 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00106 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - rcu:8268416 806.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00739 Blo-Chr5:26349643 Blo18g00106 Blo-Chr18:991140 0 dispersed
Blo16g00585 Blo-Chr16:24086860 Blo18g00106 Blo-Chr18:991140 8.64E-07 transposed
Blo17g00099 Blo-Chr17:810584 Blo18g00106 Blo-Chr18:991140 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00585 BCT 1 571 Mechanosensitive Ion Channel Family AT4G00290 52.4 4.1e-147 518.5
Blo17g00099 . 686 1270 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-181 632.5
Blo18g00106 . 9 646 Mechanosensitive Ion Channel Family AT5G10490 53.6 2.2e-180 629.4
Blo05g00739 . 210 695 Mechanosensitive Ion Channel Family AT5G10490 62.2 4.1e-150 528.9
Blo18g00106 . 9 653 Mechanosensitive Ion Channel Family AT1G58200 55.1 1.3e-185 646.7
Blo17g00099 . 669 1266 Mechanosensitive Ion Channel Family AT1G58200 58.8 1.1e-184 643.7
Blo05g00739 . 210 666 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.4e-134 476.5
Blo15g00394 . 611 1471 Mechanosensitive Ion Channel Family AT1G53470 52.7 1.1e-240 830.1
Blo15g00394 . 611 1473 Mechanosensitive Ion Channel Family AT3G14810 52.2 2.4e-232 802.4
Blo15g00394 . 611 1472 Mechanosensitive Ion Channel Family AT1G78610 58.1 5.0e-270 927.5
Blo15g00394 . 769 1468 Mechanosensitive Ion Channel Family AT2G17000 58.2 4.7e-220 761.5
Blo04g00586 . 217 602 Mechanosensitive Ion Channel Family AT2G17000 55.0 1.8e-110 397.5
Blo12g01027 BCT 16 781 Mechanosensitive Ion Channel Family AT5G19520 50.8 2.1e-195 679.5
Blo12g01027 BCT 71 781 Mechanosensitive Ion Channel Family AT5G12080 56.9 2.6e-214 742.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00106 Blo_Chr18 FPKM 6.970018 7.381881 10.736237 12.38494 8.433954 5.911878 7.503089 9.107368 8.762578 9.389094