Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00106 ATGGCTAATGCTGGTTCTATGCTAGTATCCCGTGAATTAAGAATTCATAATGGCCGTGGATGCTGTAACACATATAATAATGTAATGAGAAAGACTCGAATACATCTTGTTACAATCGATCTCACGTCTCATGGTTTGTCAAATCTAATGATATGTGTTGTGAAGAATTTTCTGTTTGATCCTCAGAAGCAGAATCCATGGACTCTTCAACTTTTAAGAAGAGTACCTGTCCCAGTAGTTCCTGTCTCTTCTAAATGCAATATTTTCTTATGCCAATCTTTTATGGTACCGGGAGGAGGAAGTGGGCCTTCCATTCTAAAATCTGCTACCCTGATATTGACTAGAACATATGATGCTTTATGCGGGAGCCTCCTTATAATTAAATTGTTTCCAGCAATTGGTTTCATTGCTTTTGCTGTTTGGGGTGTTCGGCCTCTCATCCGCTTGAGCAGGAATTTATTTCTCCATAAAACAGATGATAGTTGGAATAAAAGTAATGTTTACTATGTTGCAACTCATTACATTCGTCCGCTGCTGCTTTGGTTTGGTGCTACATTAATCTGCAGGGCATTAGACCCATTAGTCCTACCTTCAGACGTCACCCAAGCTATTAAACAGCGACTTCTTAATTTTGTGCAATCATTGTCAACAATGCTTGTGTTTGCCTATTGTTTATCGAGCTTGATTCAACAGGCTCAGAAGTTCTTCATTGAAACAAATGATTCTGGTGAAGCGAGAAATATGGGTTTCGATTTTGCTGGGAAAACTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTCTTCATGGAGTTGCTTGGTTTTTCTACCCAAAAGTGGCTGACTGCTGGTGGTCTCAGCACAGTATTACTCACCCTCGCTGGTCGTGAGATTTTGACAAATTTCCTTTCAAGCATAATGATTCATGCCACGAGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATTGACGGCTACGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCTCCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATCCCAAACCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCCCATCTTGCCATCAGCCACTTCAACGTCAATAAAATCAATAATGTTGTAGCTGACATGCGCAAAGTTTTAATGAAAAATCCTCAAGTTGAGCAGAAAAGATTACACAGAAGAGTTTTCCTGGATTATATTGATCCTGAAAATCAAGCTCTTATGGTTCTAGTTTCGTGCTTTGTGAAAACCCCTCATTGTGAAGAGTACCTATGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCCGGGTCATCAACCATCACCGCGCCAGGCTCGCTACGCCCATTCGCACAGTTCAGAAAAGTTACAGAGAGGCTGACTTGGATGTATCTTTTGCTGATACCATCCTCTCACAATCTACGGCAGCTAATGATCGTCCTCTCCTACTCATTGAACCGTCATATAAGATGAGCAGTGATGACAAAGTGAAGGCCTTCACTCGATCCACGAGTTCAGACGAAGAAAAAGAAGCCGAGCAAGAAGCAGCATCCACAACTGATATGAATGCCTCTGACAAAGCTGGATCGTCATCAAATCTTGAAGCCAAAAAAGGCGATAAAAAGGATGAGAGTATGGCGATCAAGTCCACCAACACTACCCCTAAAGGAGTGACATCGGAAAAGTCCTGGGCTGTTTTGCCGGCATCAGACAGTGAAGAAATAGACACGGCATCAGTTACTTTGCGCATGAAGGAAGAAGGCGAAAAGGGTACTGTATCGACTGCAACATCACTCCCTCCATTGGAAGAGAACATACTTCTAGGTCTTGCACTGGAAGGGTCGAAAAGAACGCTTCCAATTGAGGAAGAAACTCCTTCAATGTTTGAATCAAGAGAAATGTCTACCCATCGAACTCCACTTTCCCAAATTAGCAAGGAAGCTCAAGATGCTCAGGTACCAGCAGTTCCTGGAGCGCCCCAAAATGCTTAA 2049 42.31 MANAGSMLVSRELRIHNGRGCCNTYNNVMRKTRIHLVTIDLTSHGLSNLMICVVKNFLFDPQKQNPWTLQLLRRVPVPVVPVSSKCNIFLCQSFMVPGGGSGPSILKSATLILTRTYDALCGSLLIIKLFPAIGFIAFAVWGVRPLIRLSRNLFLHKTDDSWNKSNVYYVATHYIRPLLLWFGATLICRALDPLVLPSDVTQAIKQRLLNFVQSLSTMLVFAYCLSSLIQQAQKFFIETNDSGEARNMGFDFAGKTVYTAVWVAALSLFMELLGFSTQKWLTAGGLSTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSHLAISHFNVNKINNVVADMRKVLMKNPQVEQKRLHRRVFLDYIDPENQALMVLVSCFVKTPHCEEYLCVKEAILLDLLRVINHHRARLATPIRTVQKSYREADLDVSFADTILSQSTAANDRPLLLIEPSYKMSSDDKVKAFTRSTSSDEEKEAEQEAASTTDMNASDKAGSSSNLEAKKGDKKDESMAIKSTNTTPKGVTSEKSWAVLPASDSEEIDTASVTLRMKEEGEKGTVSTATSLPPLEENILLGLALEGSKRTLPIEEETPSMFESREMSTHRTPLSQISKEAQDAQVPAVPGAPQNA 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 991140 996434 - BLOR08594 Blo18g00106 73410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00106 682 Pfam Mechanosensitive ion channel 255 462 IPR006685 GO:0016020|GO:0055085
Blo18g00106 682 SUPERFAMILY Sm-like ribonucleoproteins 298 368 IPR010920 -
Blo18g00106 682 MobiDBLite consensus disorder prediction 552 566 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 636 682 - -
Blo18g00106 682 Gene3D - 314 369 IPR023408 -
Blo18g00106 682 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 582 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 536 551 - -
Blo18g00106 682 Gene3D - 209 312 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 515 535 - -
Blo18g00106 682 MobiDBLite consensus disorder prediction 651 668 - -
Blo18g00106 682 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 593 672 IPR045042 -
Blo18g00106 682 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 582 IPR045042 -
Blo18g00106 682 MobiDBLite consensus disorder prediction 515 580 - -
Blo18g00106 682 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 593 672 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00739 Blo-Chr5:26349643 Blo18g00106 Blo-Chr18:991140 0 dispersed
Blo16g00585 Blo-Chr16:24086860 Blo18g00106 Blo-Chr18:991140 8.64E-07 transposed
Blo17g00099 Blo-Chr17:810584 Blo18g00106 Blo-Chr18:991140 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00106 K22047 - rcu:8268416 806.594