Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00111 ATGTATGTTGAATTTAAAAATGTCGACGACAAGTATCAGTACTCCAGCGAAACCAGAGATGCTCGTGTCCACGGTTGGATCTGTGAGGACCCACCCACCGGATTTTGGCAAATCTCCGCCAGTGATGAGTTCCGCTCCGGTGGGCCTCTCAAGCAATTCCTTAACTCTCACGTGGGGCCTACCAGTCTCTCTGTATTTCATAGCACCCATTATGCCGGTGCTGATATGATTATCCGAATCGGACCAAATGAGCCATGGAAGAAACTATACGGCCCCATTTTCGTGTACGTTAATTCTTTGTCCAACAAGAATAATTCTCTTTCGCTCTGGGAGGATGCAAAAACTCAGCTGATCGAAGAAATTAATAGTTGGCCGTATGATTTCCCGGCGTCGGAAGACTTTCCGAAGTCTGATCAACGGGGAAGTCTAAGAGGGAGATTATTGATTTTTGATTCGTATGTTAGCGATGAACACGTGCCGGCGAAAGGAGCGTTGGTGGGACTGGCTCCTCCTGGAGAAGCCGGCTCGTGGCAGACAGAATGTAAGGGTTACCAGTTCTGGACAAGCGCGGATGAAGAAGGCTATTTCTCGATCAAGAACATTCGGTTTGGCGAATATAATCTCTACGCGTCTGTTCCTGGCTTCATCGGCGATTTCCTTTATCATCTTCCCATCTCCATAACCTCTTCTTCCTCTGGTCTGGGGGGGATTGATCTGGGTGATCTGATTTATGAGCCTCCGAGATACGGCCCCACCTTGTGGGAAATAGGCGTTCCTGATCGAACTGCAGCAGAATTCTACGTCCCTGATCCTTACCCTAATCTGACCAACAAGCTTTACGTTAATACCACTCAAAAGTATAGACAGTATGGATTGTGGGAAAAATATGCAGATTTATATCCTCGAGAAGACTTGATCTACACCGTTGGAGTTAGTAATTATTCAGCGGATTGGTTCTTTGCTCAAGTTACCAGAAAGACAGAAAACAACTCATATCAAGGAACCACATGGCAGATCAAGTTCCAACTTGACGATGGATTTGTCAATGGAACCTTTGTATTACGCCTGGCACTTGCTACTGTTCATGCATCTGAGTTGCAGGTCAGAGTGAACGATGAGAAAGAAGACCCTCCATTGTTTTCAACTGGAGTGATAGGGAAAGACAATACGATCGCGAGACATGGAATTCACGGGCTTTACAGGCTATTTTCTGCAGAAATTTCAGGGAGGAGGCTAGTGGTAGGAAATAATACTATTTTTCTTACACATGCTTCTTCCAACGTAAGCCCTTTTCAAGGAAGAATGGCAACGTTCGAACTATATCGGAGGTCAACGATTGGAATGTGCCTGACTGAGACTTTGGACGAAATGGTTCAGAACGGTACTCTCAGTCCAGAGCTCGCGTTCCAGGTTCTTGTTCAGTTCGACAAGTCTATGACTGAAGCTCTGGAAACCCAAGTAAAGAGCAAGGTCACCATTAAGGGACATCTTCACACCTACCGATTCTGCGACAATGTTTGGACCTTTATCTTGCAGGATGCGTCGTTCAAGAATGAAGACAGCCAAGAGGTTGTCGGCCGAGTCAAAATAGTGGCATGCGATTCGAAGTTACTAACACAATAG 1623 45.9 MYVEFKNVDDKYQYSSETRDARVHGWICEDPPTGFWQISASDEFRSGGPLKQFLNSHVGPTSLSVFHSTHYAGADMIIRIGPNEPWKKLYGPIFVYVNSLSNKNNSLSLWEDAKTQLIEEINSWPYDFPASEDFPKSDQRGSLRGRLLIFDSYVSDEHVPAKGALVGLAPPGEAGSWQTECKGYQFWTSADEEGYFSIKNIRFGEYNLYASVPGFIGDFLYHLPISITSSSSGLGGIDLGDLIYEPPRYGPTLWEIGVPDRTAAEFYVPDPYPNLTNKLYVNTTQKYRQYGLWEKYADLYPREDLIYTVGVSNYSADWFFAQVTRKTENNSYQGTTWQIKFQLDDGFVNGTFVLRLALATVHASELQVRVNDEKEDPPLFSTGVIGKDNTIARHGIHGLYRLFSAEISGRRLVVGNNTIFLTHASSNVSPFQGRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAFQVLVQFDKSMTEALETQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSQEVVGRVKIVACDSKLLTQ 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1034331 1049155 - BLOR08599 Blo18g00111 73415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00111 540 Pfam Polysaccharide lyase family 4, domain III 252 435 IPR029411 -
Blo18g00111 540 Gene3D - 489 539 IPR009088 GO:0005672|GO:0006367
Blo18g00111 540 SUPERFAMILY Starch-binding domain-like 137 228 IPR013784 GO:0030246
Blo18g00111 540 Gene3D - 250 432 - -
Blo18g00111 540 Gene3D - 437 488 IPR009083 GO:0005672|GO:0006367
Blo18g00111 540 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 6 436 - -
Blo18g00111 540 SUPERFAMILY Galactose-binding domain-like 250 428 IPR008979 -
Blo18g00111 540 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 438 483 IPR015872 GO:0005672|GO:0006367
Blo18g00111 540 Pfam Transcription initiation factor IIA, gamma subunit 494 535 IPR015871 GO:0005672|GO:0006367
Blo18g00111 540 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 486 536 IPR009088 GO:0005672|GO:0006367
Blo18g00111 540 CDD RGL4_M 139 242 IPR029413 -
Blo18g00111 540 CDD TFIIA_gamma_C 491 536 IPR015871 GO:0005672|GO:0006367
Blo18g00111 540 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 438 488 - -
Blo18g00111 540 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 436 - -
Blo18g00111 540 Pfam Polysaccharide lyase family 4, domain II 162 231 IPR029413 -
Blo18g00111 540 Gene3D - 138 228 - -
Blo18g00111 540 CDD TFIIA_gamma_N 438 485 IPR015872 GO:0005672|GO:0006367
Blo18g00111 540 CDD RGL4_C 254 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00985 Blo-Chr13:32260856 Blo18g00111 Blo-Chr18:1034331 1.48E-36 dispersed
Blo17g00101 Blo-Chr17:848563 Blo18g00111 Blo-Chr18:1034331 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00111 K18195 - jre:109014325 604.749