Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00120 ATGAGGGCCTCGATGCACGCGCACGCAGTTGATCGGGAGTCTCGGCCGAGAACCAGTAAGGTGGCCAAGCGGGTCTCCGAAGGCGGGGCGGTGGAGTCGTGGGTGGTGGCTCTGAGGACGGCAATTCTGATCGAAGAAGTTCGACGGTTAATCGTGAGAGTTACTTTGACAATAGAGGCCTTATCCTTGAGGGAATTCATTATGGACTTGAAAGAAGACATGGAGTCTTGCCCAAAAGAGGAAACTCTTGCGCGAAGGGTGAGGCAACGTTCGTTGCTTTCCCTGCCTCTCAGCCAAAAAGAAAAGGGATGTGGTCCAAGGCTTGTGTGGGCTGCAGATCGAATGGATTTGGGCCACGGCGACTTAATTTTCCTTCTGTTCGATGAAATGAGACGCTTTAGCTGGCTTAGCCTTTGCGGTCGGCATTTTCTTTCATCTACATCTGTACAATCGCACTTTAGTCAAATGAATTTGCTACGGAATGTGTCGTCCTCGCAACGAGCGTCATCTCACTTAAGAGGTTTATGTCAGTCCATTGAACGAGACTATTATGAAATTCTTAATCTTCCTGATGATGCCACTCAGGATGAGATAAAAAAAGCTTATCATTCACTAGCCAAAAAATATCATCCAGATGCAAATAAGAATAATCCTTCAGCAAAGAAAAAATTTCAGGAGATTAGAGAAGCATATGAGACTTTACACGATTCTAAAAAGAGGTTGCAGTACAACATGAGGCGTAATAGTTCTCAGACCGGAGAATTCGGTGCTGGTGACGCAAAGGGCTTTAGATATGGTCATCGAACTCATTTTTCTGATTCATTCCATAAAATATTTTCCGAGATCTTTGAACACGAGACACACAATGTTGCTTCAGATACTCAGGTAGAGCTATTGCTCTCTTTCACTGAAGCTGCAAAAGGATGCATAAAGGATTTGTCTGTCGACGCATTCATTCCTTGCAATGCTTGCTATGGAATTGGCTATCCCACTGATGCCCAGAAAGAAGTTTGTCCAATTTGTAGAGGTGTGGGGAGAGTTACCATTCCTCCATTTACATCCACATGCAACTCTTGTAAAGGATTGGGCCAATTGTTTTGGGTGCAGGAATACTGTCTATCCTGCCGAGGATCAGGGGTAGTTCAAGGTGTCAAGAATATCAAAGTCACAATACCTGCAGGTGTGGATTCGGGGGATACAATTCGTGTGCCAGAAGCTGGTAATAGTGGAGGCAGGGGAAGTCAATCTGGCAGCTTATTCATTAAATTGAAGGCAGATTTATACTTAGAAATTTCTTTTGTTGCTGAGGATCTTGTATTTAAGAGAGATGGAGTGGATATTTATGTAGATTTCAACATCAGCTTTACTCAAGCTATTCTGGGTGGCAAGATTGAGGTGCCAACTTTATTAGGCAAGACTCAAATAAATATACCAAAAGGGGCTCAGGATGGACAACTTATGATCATCAGAGGCAAAGGACTGCCCAAATATGGTTTTCTTATTGACCATGGGGATCAATTCGTTCGATTTCGTGTGAAATTCCCCACTGAGGTAAATGAGCGACAGCGTGCTATTTTGGAAGAGTTTGCACTGGAGGAAATGAATAATGGAAATGCCAATGCTGACGGAGGAAATTGGTGGCAACAAGTTCTTGAACAACTTGGGGACCTCAATTTTGCGCTCAAATTGTCTCTATTCTTATTGATCCTTCTATTGTTGAGTAAAGGCATGGGATAG 1737 43.64 MRASMHAHAVDRESRPRTSKVAKRVSEGGAVESWVVALRTAILIEEVRRLIVRVTLTIEALSLREFIMDLKEDMESCPKEETLARRVRQRSLLSLPLSQKEKGCGPRLVWAADRMDLGHGDLIFLLFDEMRRFSWLSLCGRHFLSSTSVQSHFSQMNLLRNVSSSQRASSHLRGLCQSIERDYYEILNLPDDATQDEIKKAYHSLAKKYHPDANKNNPSAKKKFQEIREAYETLHDSKKRLQYNMRRNSSQTGEFGAGDAKGFRYGHRTHFSDSFHKIFSEIFEHETHNVASDTQVELLLSFTEAAKGCIKDLSVDAFIPCNACYGIGYPTDAQKEVCPICRGVGRVTIPPFTSTCNSCKGLGQLFWVQEYCLSCRGSGVVQGVKNIKVTIPAGVDSGDTIRVPEAGNSGGRGSQSGSLFIKLKADLYLEISFVAEDLVFKRDGVDIYVDFNISFTQAILGGKIEVPTLLGKTQINIPKGAQDGQLMIIRGKGLPKYGFLIDHGDQFVRFRVKFPTEVNERQRAILEEFALEEMNNGNANADGGNWWQQVLEQLGDLNFALKLSLFLLILLLLSKGMG 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1102355 1111984 + BLOR08608 Blo18g00120 73424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00120 578 Pfam DnaJ domain 182 244 IPR001623 -
Blo18g00120 578 SUPERFAMILY HSP40/DnaJ peptide-binding domain 293 424 IPR008971 GO:0006457|GO:0051082
Blo18g00120 578 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 308 381 IPR036410 -
Blo18g00120 578 CDD DnaJ_zf 321 379 IPR001305 GO:0031072|GO:0051082
Blo18g00120 578 Pfam DnaJ C terminal domain 295 515 IPR002939 -
Blo18g00120 578 CDD DnaJ_C 380 517 - -
Blo18g00120 578 ProSitePatterns Nt-dnaJ domain signature. 224 243 IPR018253 -
Blo18g00120 578 Gene3D - 321 379 - -
Blo18g00120 578 PRINTS DnaJ domain signature 184 202 IPR001623 -
Blo18g00120 578 PRINTS DnaJ domain signature 202 217 IPR001623 -
Blo18g00120 578 PRINTS DnaJ domain signature 219 239 IPR001623 -
Blo18g00120 578 SMART dnaj_3 181 239 IPR001623 -
Blo18g00120 578 Hamap Chaperone protein DnaJ [dnaJ]. 179 557 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Blo18g00120 578 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 145 555 - -
Blo18g00120 578 SUPERFAMILY Chaperone J-domain 181 276 IPR036869 -
Blo18g00120 578 Gene3D - 436 543 - -
Blo18g00120 578 SUPERFAMILY HSP40/DnaJ peptide-binding domain 439 526 IPR008971 GO:0006457|GO:0051082
Blo18g00120 578 MobiDBLite consensus disorder prediction 1 22 - -
Blo18g00120 578 ProSiteProfiles dnaJ domain profile. 182 247 IPR001623 -
Blo18g00120 578 CDD DnaJ 182 236 IPR001623 -
Blo18g00120 578 Gene3D - 293 420 - -
Blo18g00120 578 Gene3D DnaJ domain 179 292 IPR036869 -
Blo18g00120 578 ProSiteProfiles Zinc finger CR-type profile. 308 384 IPR001305 GO:0031072|GO:0051082
Blo18g00120 578 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 145 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00120 - - - qlo:115958897 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00614 Blo-Chr6:28971061 Blo18g00120 Blo-Chr18:1102355 3.25E-62 dispersed
Blo09g00350 Blo-Chr9:14122806 Blo18g00120 Blo-Chr18:1102355 2.52E-14 dispersed
Blo15g00020 Blo-Chr15:137880 Blo18g00120 Blo-Chr18:1102355 8.88E-49 dispersed
Blo17g00846 Blo-Chr17:27740975 Blo18g00120 Blo-Chr18:1102355 2.22E-07 dispersed
Blo18g00120 Blo-Chr18:1102355 Blo04g00029 Blo-Chr4:294600 4.47E-26 dispersed
Blo18g00120 Blo-Chr18:1102355 Blo05g00194 Blo-Chr5:1942106 2.00E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00120 Blo_Chr18 FPKM 9.282946 11.094617 7.266191 8.538702 4.820231 3.903797 3.244443 0.0 0.0 0.159962