Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00136 ATGACAAACCAGAGGGTGGTGATTTCCGAGGCGAAATCTACTATCGGAATGGCTTCGACGGCGGCGATGTCTAAGTCGGCTCCGATGTCACCGGCGGTGAGAGAGCCAATGGCTAGGATCGGAGAGTTGGTGGCTATGTGTCAAAAGAAGCTCATGAAGAGACTGGAAAATGGGGCTAAGGTGAATGCTTGGGTGGAGGCAATGAGAGATTCATCTCCATCAAAACTCAGGCCCGTTTCTTCTTTCTCTGAACCAGCAGATCAAAGCTCTTGGACACTTCTTCATCCATCAGCTCTGCACATGTTCGACGAAATAACAAAAGCTTCAAAAGGAAAGCAAATAGTCATGTTTTTGGATTATGATGGGACACTCTCCCCCATCGTCGAAGACCCCGATAGAGCTTTCATGACCCCCGAGATGAGAGAAGCTGTGAAGAATGTTGCTAGATACTTCCCTACAGCCATCGTGAGCGGCAGAAGCCGAGAAAAGCTGATAAAACAAGACTGTATTTTTTTTACTGATATAGATTCTGGCTTTCGAGTTTACAACTTCGTACAATTAGCAGAGCTTTACTACGCAGGAAGCCATGGAATGGACATAAAGGGACCAACCAAAGAACGTAAATACAAGAAGCTTAAAATTAATCATTTTCTTTCTTTTGCGTCAATCATTCAGGGAAACCCATCACTCTCTTGCCAGCCAGCCAGTGAATTCTTACCCATGGTTGACGAGGCATACAAGGCTTTGTGTGGGAAAACTGCACCCATTGAAGGAGCCATGGTGGAAAACAACAGATTCTGCGTATCTGTCCATTTCCGCTGCGTTGATGAAAAGAATTGGAGTGCATTAGCTGAGAAAGTTAGGTCGGTGGTCAACGAGTATCCAGAACTTAGGATGACTCAAGGAAGAAAGGCATGGTTTGCGAATTCGGAAAATGTTTTGCCTGTTTACATTGGAGACGATCAGACCGACGAGGATGCATTCGAGGACTTTCTTCCATTTCTGTATGGATCCGAAATGGACGGTTTTGATCGCCTTCCTGATTGCCTGATCATCGTTGTCTTCAACTCAGTCTCCGATAACAAAACCCTACTTCGCTGCCGAGCTGTTTCCAAGCGTTTCAACTTACTCGTCCCCCAGACTGAGTCGGTCCTCTTGAAGGCCAACGTCGCAGAACTCGCCTGCAAACGGGGATTTGAGAGGATCAGGCGGGTTAAGATGGAGATCTCTGGTGACGGGGATTTCGGCCGGAGACTCAAGACGAGGATTGTTTGGACAATAAATGCTCTGATAGCGTCGTCTACGAGGCGCTACCTGTTGAAGAAGGTTGTGAAGGAGCACTGCGAGCTGCTGAACTATAAGGAAGAAGAAGAAGGGATGGTCATAGTGGAAAAGAAAGGCTTTAACCAAGCAGAGACACTTCAAAAACCAGATTACTAA 1440 46.53 MTNQRVVISEAKSTIGMASTAAMSKSAPMSPAVREPMARIGELVAMCQKKLMKRLENGAKVNAWVEAMRDSSPSKLRPVSSFSEPADQSSWTLLHPSALHMFDEITKASKGKQIVMFLDYDGTLSPIVEDPDRAFMTPEMREAVKNVARYFPTAIVSGRSREKLIKQDCIFFTDIDSGFRVYNFVQLAELYYAGSHGMDIKGPTKERKYKKLKINHFLSFASIIQGNPSLSCQPASEFLPMVDEAYKALCGKTAPIEGAMVENNRFCVSVHFRCVDEKNWSALAEKVRSVVNEYPELRMTQGRKAWFANSENVLPVYIGDDQTDEDAFEDFLPFLYGSEMDGFDRLPDCLIIVVFNSVSDNKTLLRCRAVSKRFNLLVPQTESVLLKANVAELACKRGFERIRRVKMEISGDGDFGRRLKTRIVWTINALIASSTRRYLLKKVVKEHCELLNYKEEEEGMVIVEKKGFNQAETLQKPDY 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1261960 1270457 - BLOR08624 Blo18g00136 73440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00136 479 Gene3D - 116 165 IPR023214 -
Blo18g00136 479 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 307 329 IPR044651 GO:0004805|GO:0005992
Blo18g00136 479 Pfam Trehalose-phosphatase 117 304 IPR003337 GO:0003824|GO:0005992
Blo18g00136 479 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 307 329 - -
Blo18g00136 479 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 3 304 - -
Blo18g00136 479 Gene3D - 235 309 - -
Blo18g00136 479 SUPERFAMILY F-box domain 338 378 IPR036047 GO:0005515
Blo18g00136 479 Gene3D - 231 329 IPR023214 -
Blo18g00136 479 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 3 304 IPR044651 GO:0004805|GO:0005992
Blo18g00136 479 SUPERFAMILY HAD-like 115 331 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00136 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - pvy:116131529 352.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00124 Blo18g00136 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00747 Blo-Chr14:21245017 Blo18g00136 Blo-Chr18:1261960 3.58E-09 dispersed
Blo17g00124 Blo-Chr17:1144380 Blo18g00136 Blo-Chr18:1261960 2.28E-176 dispersed
Blo18g00136 Blo-Chr18:1261960 Blo15g00133 Blo-Chr15:1205252 1.65E-69 dispersed
Blo18g00157 Blo-Chr18:1473519 Blo18g00136 Blo-Chr18:1261960 1.43E-31 dispersed
Blo17g00123 Blo-Chr17:1130372 Blo18g00136 Blo-Chr18:1261960 7.20E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00136 Blo_Chr18 FPKM 14.463751 15.384762 12.661133 12.517193 13.416244 13.653919 13.154554 18.388594 16.749966 19.417494