Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00151 ATGATCGGATACAAGGGCGTAAATGTAAATTCAGTTCCTCCAAATGCTTGTATGGATTTGGTCAAACTAGAACGACGACGTTTCAAGAACGATCTGCTTCAACTGTTCCAGCCATTTGGTGTCATAACTAAGCTTGTAATGCTTCGTGCAAAAAATCAGGCTCTCATCCAAATGCAAGATATTCCTTCTGCAGTCAATGCTTTACAATATTATGCAAATGTTCAACCGACAATAAGGGGAAGGAATGTTTATGTTCAATTCTCATCTCATCAAGAACTTACTACAATGGAGCAAAATACTCAAGGACGAGTAGACGAGCCAAATCGTATTCTCTTAGTCACAATCCATCATATGCTATATCCAATAACTGTGGACGTGCTTCATCAAGTGTTTTTCCCTCATGGATTTGTGGAAAAGATAGTCACATTTCAGAAGTCAGCTGGTTTTCAGGCCCTCATTCAGTATCAATCACGTCAAAGTGCTGTCTCCTCCAGAACTGCGCTGCAGGGGCGTAATATCTACGATGGTTGCTGTCAACTGGACATTCAATTCTCAAATCTTGATGAGTTACAAGTAAATTTCAACAATGAACGATCTAGGGATTTTACAAACCCAAACTTACCCTCTGAACAAAGAGGCAGATCCTCCCAGATGGCCAATGCAGCAGCAATAACAGCTGCCTTTGGAGGAATTTTACCTCCTGGTGTAAGCGGGACAAATGACAGGTGTACAATTCTTATCTCAAATTTTGATCCTGATAGAATAGATGAGGATAAGCTCTTCAACTTATTCTCCATATATGGCAACATTGTGAGAATTAAACTCCTCCGAAATAAACCAGATCATGCACTGGTTCAGATGGGAGATGGGTTCCAGGCTGAATTAGCAGTTCACTTCTTAAAGGGAGCCTTGTTGTTCGGAAAGCTACTGGAAGTCAACTTCTCAAAATTTCCAAATATTACTCAAGGAGCCGATACTCGTGAGTATGTAAATTCAAATCTAAACCGCTTCAATCGAAATGCTGCAAAGAACTACAGGTACTGCTGTTCCCCAACAAAGATGATCCATATTTCCTCCCTCCCCCAAGAAGTCACTGATGAGGAGATTGTGAACCTCCTTGAGGAGCATGGCACCATTGTCAACACCAAGCTATTTGAGATGAATGGAAAGAATCAGGCCCTGGTCATGTTTGAAACTGAAGAGCAGGCCACTGAAGCCCTTGTTTGCAAGCACGCCACCTCAATTGGCGGCTCTATTATGCGGATTTCCTTTTCCCAATTGCAGGGAATCTAA 1293 41.84 MIGYKGVNVNSVPPNACMDLVKLERRRFKNDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPSAVNALQYYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRVDEPNRILLVTIHHMLYPITVDVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSSRTALQGRNIYDGCCQLDIQFSNLDELQVNFNNERSRDFTNPNLPSEQRGRSSQMANAAAITAAFGGILPPGVSGTNDRCTILISNFDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKLLEVNFSKFPNITQGADTREYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTDEEIVNLLEEHGTIVNTKLFEMNGKNQALVMFETEEQATEALVCKHATSIGGSIMRISFSQLQGI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1380176 1386137 - BLOR08639 Blo18g00151 73455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00151 430 CDD RRM4_PTBPH3 346 424 - -
Blo18g00151 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 90 IPR000504 GO:0003723
Blo18g00151 430 Gene3D - 337 429 IPR012677 -
Blo18g00151 430 Gene3D - 10 106 IPR012677 -
Blo18g00151 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 427 IPR000504 GO:0003723
Blo18g00151 430 Gene3D - 108 212 IPR012677 -
Blo18g00151 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 317 IPR000504 GO:0003723
Blo18g00151 430 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 26 429 - -
Blo18g00151 430 Gene3D - 240 335 IPR012677 -
Blo18g00151 430 SUPERFAMILY RNA-binding domain, RBD 106 208 IPR035979 GO:0003676
Blo18g00151 430 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 26 429 - -
Blo18g00151 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 324 - -
Blo18g00151 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 105 - -
Blo18g00151 430 SMART rrm1_1 354 423 IPR000504 GO:0003723
Blo18g00151 430 SMART rrm1_1 23 86 IPR000504 GO:0003723
Blo18g00151 430 SMART rrm1_1 112 181 IPR000504 GO:0003723
Blo18g00151 430 SMART rrm1_1 244 313 IPR000504 GO:0003723
Blo18g00151 430 SUPERFAMILY RNA-binding domain, RBD 29 101 IPR035979 GO:0003676
Blo18g00151 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 418 IPR000504 GO:0003723
Blo18g00151 430 Pfam RRM-like domain 108 185 IPR021790 -
Blo18g00151 430 SUPERFAMILY RNA-binding domain, RBD 241 424 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00151 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 711.835
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00141 Blo18g00151 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00366 Blo-Chr17:3977510 Blo18g00151 Blo-Chr18:1380176 1.13E-07 dispersed
Blo18g00151 Blo-Chr18:1380176 Blo18g00393 Blo-Chr18:4230839 1.21E-09 dispersed
Blo17g00141 Blo-Chr17:1309809 Blo18g00151 Blo-Chr18:1380176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00151 Blo_Chr18 FPKM 10.806406 10.515317 15.401725 15.347244 18.916639 16.318007 18.517038 22.312674 21.136747 21.925632