Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00172 ATGAAATTGCTACAACATGGCGTCGTTGGAGAACAAGAGACTGTCGGTGCCGGTGGCCGTAGTCTGGTTGTAGGCGTGAAGCTTGACTCGCATAGCAGAGAGCTTCTGACTTGGACTTTGGTGAAAGTTGCTCAGCCGGGTGACATTGTGATTGCTCTTCATGTTCTTGGCAACGACGAGGTCGTGGATCGGAATGGCAAGTCCTCGCTTCTTTCCATCGTCAAAGCGTTCGACTCCGTTCTTGCTGTCTATGAAGGTTTCTGCAATTTGAAACAGGTGGATCTCAAGCTTAAGATATGCAGAGGAACATCAGCTCAGAAAGTTATAGTCCGGGAAGCAAATTCTTATAATGCGACTAATGTGATAGTCGGAACTGCTCGTAATCACCATAAAATCCGGTCGTCTACCTCGGTTGCCAAGTATTGTGCCAAAAAACTTTCGAAGGATTGTTGGGTTCTTGCTGTAAAAAATGGAAAAGTGGTTTTCCAAAGCTCCTCGACAAAAAATATTCGCGCCCAAGGAATTGAAGAATGTGGTGGAAATGGTTTCCTTCATTCACTGCCCAGGTCATTGGGTAATTCTTCCAAAATATTAAATGATGATAATAATGCCATTGGTTGTGTAAAGGAAAATGTTGATCTACCCAGTACGAACCTGATCAAACAGAGTTGTACAAGTTGTTCTTTGGTTTCTGCTTCGCCGACTAATACTATCGACCAATCTTTAAGAGAGTTTGATGGTGATGGGGTTGAACCTGAAAATTCTTTGGCCATGGTACCAGTTCACAAACCAGAAGAGGCATCAACTTCTATCAGGATCTTGATTGAAGATTTGCCTGAACTAAAACCTGGTTGGCCACTTCTTCGGCAATCTGATCGATCTCTAGGCCGACATGATTTCAATATACCATTAGTTCGGAAAATATCTGTTGTTCAGTGGGCTTTGAAGCTACCAACAAGGTGTCCTTACAGTGCGATTTCAAATCAGAATCAGATCAGTTTCGGTTCATTTCTGAATCTGGATAGAAATAGTGGTGCAATTGTGCCCGTTGGTCCTGAACCAGTGACTTCTCCGCATTTCCCAGATCAAAATTCAATAGTATTACCTAAAGAATTGGATGATCTCCATAAGAAGCATTCATCAACTTGCCGATTGTTTAAGTACCAGGAACTTCTCCGAGCAACTTCTAATTTCTTGGATGATAATTTGATTGGGAAAGGAGGCAGCAGCCAAGTTTATAGAGGCTGCCTTCCAGATGGGAAGGAAATAGCTGTGAAGATCTCAAAGCCATCTGAAGATGTCCTTCAGGAGTTTGTTTTAGAAATAGAAATTATTACTGCTTTGCATCACAAGAATATCATTTCCCTTTTAGGATTCTGCTTTGAAGCCAATAAGCTCTTGTTGGTGTATAATTTTTTATCGAGAGGAAGCTTAGAAGAGAACCTCCATGGAAATAAAAAAGATTCAAGTGCATTTGGTTGGAGTGAAAGATATAAGGTAGCTCTCGGTGTGGCCGAAGCTTTAGCTTATCTTCACAACGACAGTGCTCAACCCGTGATTCATAGAGATGTAAAATCGTCTAATGTGTTATTATTCGAAGATTTTGAGCCACAGCTGTCAGATTTCGGACTAGCTAAATTGGGGTCAACTTCCTCTGCGCATGTAACCTGCACTGATGTTGCTGGAACTTTTGGTTACTTAGCCCCGGAGTATTTTATGCACGGAAAAGTAAACGATAAAATTGATGTCTATGCTTTCGGAGTAGTACTCCTTGAGCTTCTTTCAGGGAGAAAACCTATATGCTCTGACTATCCTAAAGGCCAAGAGAGCCTAGTTATGTGGGCAAAGCCAATTCTAAAGGGTGGAAAGGTGTCCCAATTGCTTGATCCAAGATTGGGGTGTAACTATTATAAGGATCAGATAGAGTGGCTTGTTTTGGCTGCCAATCTTTGTATCAGGCGCGCTCCTCGAGCTAGACCTCAAATGAGCTTGGTTTTGAAGCTCCTTCAAGGTGACATCGAAGTAACCAAATGGGCAAGGCTTCAAGTCGATGCTGGAGATGAATCCGAAATGCTTGATGATGAAACATTTCCACGTTCTCATCTGCAATCACATCTCAACCTCGCATTGGTCGACGTGGAGGATGACTCCCTCTCCCTGAGTAGCATTGAGCAAACTATATCATTAGAAGACTACCTGAGGGGAAGGTGGAGCCGTTCGTCGAGCTTTGACTAA 2235 42.73 MKLLQHGVVGEQETVGAGGRSLVVGVKLDSHSRELLTWTLVKVAQPGDIVIALHVLGNDEVVDRNGKSSLLSIVKAFDSVLAVYEGFCNLKQVDLKLKICRGTSAQKVIVREANSYNATNVIVGTARNHHKIRSSTSVAKYCAKKLSKDCWVLAVKNGKVVFQSSSTKNIRAQGIEECGGNGFLHSLPRSLGNSSKILNDDNNAIGCVKENVDLPSTNLIKQSCTSCSLVSASPTNTIDQSLREFDGDGVEPENSLAMVPVHKPEEASTSIRILIEDLPELKPGWPLLRQSDRSLGRHDFNIPLVRKISVVQWALKLPTRCPYSAISNQNQISFGSFLNLDRNSGAIVPVGPEPVTSPHFPDQNSIVLPKELDDLHKKHSSTCRLFKYQELLRATSNFLDDNLIGKGGSSQVYRGCLPDGKEIAVKISKPSEDVLQEFVLEIEIITALHHKNIISLLGFCFEANKLLLVYNFLSRGSLEENLHGNKKDSSAFGWSERYKVALGVAEALAYLHNDSAQPVIHRDVKSSNVLLFEDFEPQLSDFGLAKLGSTSSAHVTCTDVAGTFGYLAPEYFMHGKVNDKIDVYAFGVVLLELLSGRKPICSDYPKGQESLVMWAKPILKGGKVSQLLDPRLGCNYYKDQIEWLVLAANLCIRRAPRARPQMSLVLKLLQGDIEVTKWARLQVDAGDESEMLDDETFPRSHLQSHLNLALVDVEDDSLSLSSIEQTISLEDYLRGRWSRSSSFD 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1660993 1664370 - BLOR08660 Blo18g00172 73476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00172 744 CDD USP_Like 22 152 - -
Blo18g00172 744 Gene3D Transferase(Phosphotransferase) domain 1 473 685 - -
Blo18g00172 744 Pfam Universal stress protein family 21 152 IPR006016 -
Blo18g00172 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Blo18g00172 744 PANTHER OS08G0249100 PROTEIN 14 727 - -
Blo18g00172 744 SUPERFAMILY Protein kinase-like (PK-like) 379 669 IPR011009 -
Blo18g00172 744 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Blo18g00172 744 PANTHER - 14 727 - -
Blo18g00172 744 Gene3D HUPs 20 157 IPR014729 -
Blo18g00172 744 SMART serkin_6 398 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00172 744 Gene3D Phosphorylase Kinase; domain 1 369 472 - -
Blo18g00172 744 ProSiteProfiles Protein kinase domain profile. 398 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00172 744 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 158 - -
Blo18g00172 744 Pfam Protein kinase domain 401 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00172 - - - jre:109004828 984.171
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00166 Blo18g00172 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00664 Blo-Chr14:14339869 Blo18g00172 Blo-Chr18:1660993 1.27E-83 dispersed
Blo15g00380 Blo-Chr15:5291273 Blo18g00172 Blo-Chr18:1660993 1.96E-18 dispersed
Blo18g00172 Blo-Chr18:1660993 Blo16g01036 Blo-Chr16:38800474 4.47E-79 dispersed
Blo01g00675 Blo-Chr1:7829284 Blo18g00172 Blo-Chr18:1660993 4.12E-72 transposed
Blo06g00448 Blo-Chr6:25501975 Blo18g00172 Blo-Chr18:1660993 2.95E-153 transposed
Blo12g00063 Blo-Chr12:4371072 Blo18g00172 Blo-Chr18:1660993 6.49E-77 transposed
Blo16g00554 Blo-Chr16:22812215 Blo18g00172 Blo-Chr18:1660993 0 transposed
Blo17g00452 Blo-Chr17:5700156 Blo18g00172 Blo-Chr18:1660993 5.62E-76 transposed
Blo17g00166 Blo-Chr17:1676419 Blo18g00172 Blo-Chr18:1660993 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84814 PF00069 Pkinase 5.30E-41 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00172 Blo_Chr18 FPKM 34.071159 34.94191 38.727623 37.449608 79.558693 74.771576 84.003647 71.578285 67.932526 84.004578