Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00180 ATGGCTGAAGTGATCTCTCCAATGGACGTCGATAACGAGGATGACAACCATTCTCTCAAGCCTGGCAAGGGTAAAAATGTTGTCATTTCAGGCACTCCAACCGACGGCAAAGCCATACCCTGGGTTGAGAAGTACCGACCTCAGTCTCTTGCTGATGTCGCTGCCCATCGTGATATTATCGACACCATTGATAGGCTTACCAGCGAGAATAGGTTGCCACATCTCCTATTATATGGTCCTCCAGGCACTGGTAAGACATCAACTATTCTTGCTGTTGCACGTAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCGGATGATAGGGGAATTGATGTTGTGAGACAGCAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCAAAGGCCTCAGTAAAATTGGTATTGTTAGACGAGGCAGATGCAATGACAAAAGATGCACAGTTTGCACTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTTATCTGCAATCATGTCAATAAGATTATTCCAGCCCTGCAGTCAAGGTGTACGCGCTTTCGATTCGCTCCCCTTGATAACTTCCATGTTAACGATCGACTCAAATATGTTATAGAAGCTGAAATGCTTGATGTTCCTGAGAAAGGATTGGCAGCACTTGTTCGTCTTAGCAATGGGGACATGAGAAAGGCACTGAATATTTTGCAGTCAACACACATGGCTTCTAATCAGATAACAGAAGAAGCTGTCTACTTGTGCACTGGAAATCCAATGCCCAAGGACATAGAGCAAATATCTTACTGGCTTCTGAATGAACCATTTGCAGAAAGTTTTAGAAGGATTTCTGAAATCAAGACCAAGAAAGGACTGGCCTTGGTTGATATTGTGAGAGAAGTGACCATGTTCGTTTTCAAAATAAAGATGCCGTCAGATGTTCGAGTTCAATTGATAAATGATTTGGCTGACATTGAATACAGGTTGACTTTTGGGTGCAATGATAAGTTGCAACTAGGATCCCTCATTGCTACCTTCACATGTGCTCGATCTGCACTAGTTAGTGCCGCAAAGTAG 1089 43.34 MAEVISPMDVDNEDDNHSLKPGKGKNVVISGTPTDGKAIPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVNDRLKYVIEAEMLDVPEKGLAALVRLSNGDMRKALNILQSTHMASNQITEEAVYLCTGNPMPKDIEQISYWLLNEPFAESFRRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTCARSALVSAAK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1717491 1721729 - BLOR08668 Blo18g00180 73484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00180 362 MobiDBLite consensus disorder prediction 1 30 - -
Blo18g00180 362 Gene3D - 263 360 - -
Blo18g00180 362 Gene3D - 201 262 - -
Blo18g00180 362 Pfam Replication factor C C-terminal domain 263 348 IPR013748 -
Blo18g00180 362 PANTHER REPLICATION FACTOR C SUBUNIT 5 34 358 - -
Blo18g00180 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
Blo18g00180 362 CDD AAA 59 197 - -
Blo18g00180 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Blo18g00180 362 CDD HLD_clamp_RFC 202 260 - -
Blo18g00180 362 SMART AAA_5 71 201 IPR003593 -
Blo18g00180 362 Gene3D - 21 197 IPR027417 -
Blo18g00180 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 358 - -
Blo18g00180 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 256 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00239 Blo-Chr15:2501906 Blo18g00180 Blo-Chr18:1717491 1.23E-06 dispersed
Blo16g00637 Blo-Chr16:25425495 Blo18g00180 Blo-Chr18:1717491 1.48E-16 dispersed
Blo02g01098 Blo-Chr2:41917201 Blo18g00180 Blo-Chr18:1717491 2.39E-63 transposed
Blo12g01123 Blo-Chr12:28861147 Blo18g00180 Blo-Chr18:1717491 1.46E-58 transposed
Blo11g00085 Blo-Chr11:635811 Blo18g00180 Blo-Chr18:1717491 7.42E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00180 K10756 - tcc:18592371 628.246