Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00183 ATGGAACTGGTATGCTCTCCCTCTCCCCCGTTTGTCCTCCTTGTTGATGTTATTTTCGTGCTTAGGATCTTTTTCGTGGAGAAGAACCGTTATCTCTGCATTCGCTTATTTCCAGAGCCGTCAAAGGTCTCCAAAGAGCAGCCTCCGTTTGCTCGTTTCATTCGTCGGGTCACTAACCATGAACCTAACTGGAAACCCCATGTTTCTTTTGATGAGCTCCTAAATTTTATTGTTCTCGAACAATTTGTGTTGGTTTTCTTGATTTGTACTGTGCCTGGAATCGAAGTATTGATTAGTTCGAATTCCATGTCAGTTCAAGAGAGACTTTCTCGAACTGTTGAAGACAATGCTTGGATCATTGAAGGCATTTTTCCGCGCGGACTTGTCATTGATGTGGAGTTTTTGGACCTTATGATTGTCCCTCAAAATGGAGGAGAATGCAAATCCATATGGCCTAGTCATAGAATTGAAGACATTTCAACCCAAACAACACTTAAGCGGCAAACAATGGTTTTCATTTTGATTTGTCAATTGCTAACAAGTGGTCCAAGTGAAATGTTTGACCACTCGCAATTGTTTGGGGGTACATGGCCATGGGCATATCCAGCTTTGTGCTTCTCATGTGGTTACTTTGCATATGATCAATGGGATATGCTTCATTACAGATTATACAGTGGATGGATACCAGCTATCTTGGTTCACCATCTTATACTTCTCATTTGCTTTACTCTTGCCTTGTACCGGAACGTCACTATCAACTACCTTATTCTTACTCTCATTTGTGAGCTGCATTCGATCTTTCTCCACACACGGAAAGTGCGAAGAATGGCTGGTTTCCGCAACTCCGAGAGTATAATCATAACTGTGGAATGGGCTCTAAACTGGGTAATGTTTGTTCTGGCGAGGTTCATTCCTCACATTCTTATCACAATCAAGCTCATAAAAGATGCTTCAAAGTTCGGCACCGGGGTGGAGCTGCCACTTGCTCTGTTCGGTATGGCTGGAATGAACCTACTTAATGTTTTTCTCGGCATCGACCTCTCCAATGCATACAGAAGAGAGAAAAATAAACATAATAGTACTCAACATCATGAAGAATGA 1101 42.05 MELVCSPSPPFVLLVDVIFVLRIFFVEKNRYLCIRLFPEPSKVSKEQPPFARFIRRVTNHEPNWKPHVSFDELLNFIVLEQFVLVFLICTVPGIEVLISSNSMSVQERLSRTVEDNAWIIEGIFPRGLVIDVEFLDLMIVPQNGGECKSIWPSHRIEDISTQTTLKRQTMVFILICQLLTSGPSEMFDHSQLFGGTWPWAYPALCFSCGYFAYDQWDMLHYRLYSGWIPAILVHHLILLICFTLALYRNVTINYLILTLICELHSIFLHTRKVRRMAGFRNSESIIITVEWALNWVMFVLARFIPHILITIKLIKDASKFGTGVELPLALFGMAGMNLLNVFLGIDLSNAYRREKNKHNSTQHHEE 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1755207 1758967 + BLOR08671 Blo18g00183 73487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00183 366 PANTHER TLC DOMAIN-CONTAINING PROTEIN FLD-1 170 363 - -
Blo18g00183 366 Pfam TLC domain 172 343 IPR006634 GO:0016021
Blo18g00183 366 PANTHER CT120 PROTEIN 170 363 - -
Blo18g00183 366 ProSiteProfiles TLC domain profile. 154 356 IPR006634 GO:0016021
Blo18g00183 366 SMART lag1_27 154 355 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00183 - - - mnt:21408164 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00059 Blo-Chr9:1030734 Blo18g00183 Blo-Chr18:1755207 1.91E-17 dispersed
Blo18g00181 Blo-Chr18:1722069 Blo18g00183 Blo-Chr18:1755207 1.40E-45 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g259 . . . . . . . . Cmo04g02476 . Cma01g01052 . Car01g00927 . . . . Bhi04g01910 Tan11g1271 . . Hepe02g2263 . . Cla08g00595 . Cec08g0599 Cco08g0709 Clacu08g0719 . Cre08g0529 Cone4ag1411 Cone7ag1527 . . . . . Cme03g00549 . Blo18g00183 . . Bpe02g01644 . Bma01g00813 . Sed07g2802 Cmo01g01092 . . . Car04g02293 . Cpe01g02054 Cpe02g00843 Bhi09g01832 Tan01g3241 Cmetu01g1881 . . Mch11g1322 . . . . . . . . Lsi08g00438 . Chy03g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011858 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00183 Blo_Chr18 FPKM 0.145429 0.166285 0.454067 0.604157 0.445425 0.656986 0.70546 0.098904 0.067054 0.101042