Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00184 ATGAATGGGTGCAGATCAGAAGAGATCCCAAACTGCTATTTTCATCCCCAGGAGAAGTTGGTGGGTGTTTGTGCGCTTTGCTTGAACGAGAAACTCATTTTCTTGGCATCCAAACAGGGCTACTTTTCCTCCGGCAGAACCAGAAGCTGCAGCCTCAGATCAACTCCATCTTCCACTTCCTTTTCAAAGATCTTCGCTTTCACCAACTTTCTTAATCGTCTTGAATTCCGGCATTCTAAGCCGGAATATTCCGATCTCGACGCATCCCCCTGCCATGACGACTCATTTATCTCCATGAAGTTTGAAGAAAATGGAGTTGCTTCGTGGGAGGAGAACAAGAACCCTAAAGTTACCTTGCAAGAATGCAAAATGACGTGGAATCAAAGCTTGAGCAAAGAAGAAGATGCTTCTAAGGCGAATAACATTAACAAGACTGTGACAGAAGTCGGTAAATCTCGGGCACCGCTTAGGTGGCGGAAGCGGATTGGCCACCTTTTCCACCTCATGAGGAGTAAGAGGTCCAGCAAGGCAAACATGTGCCACGAGGCATTCACCGAATCTCATAGCGGAGAAGCATTATTAGGTGAAGTAATGTCAAATGATTTAACTATTAAAGAGGGTGTTGATGGAGATCTGGCTACAAAAGAAGATTCGAACAATAATGTGCAAAGTCTCTCAGAAAAGTTATCAGCCGCACTTATGAATGTTCGTGCCAAAGAAGATTTGGTGAAGCAGCATGCCAAAGTTGCCGAGGAAGCCATTGCTGGCTGGGAAAAGGCAGAAAATGAAGTGATAGTCTTAAAACAACAATTTGGGTCTGCAATTAAGCAAAAGTCAGCATTGGAAGATCAGGTGAGCCATCTTGATGCTGCCCTGAAGGAATGTGTAAGGCAACTAAGACAAACTAGAGATGAACAAGAGCAAAAAATCCAGGAAGCAGTGAAAGATAAAATCAATGACTTTGAATCTGCCAAACTGGATCTTGAGCAGCAGCTTCTTGAGATTCAAACCAAAGCAAAGGCTACTCATAAAAAATCTGCTCATACTAATCTTGAACTTTCCAACAAGATTGAATCCTTGGAAAAAGAAAATTCAGCCCTCAAGCTCGAGCTTTATGCGCAGTCCGAGGAGCTTGAAATCCGGACGATTGAGAGAGATTTAAGCACACAAGCAGCTGAAACTGCTAGCAAGCAGAATCTAGAATGCTTAAAGAAGGTGGCCAGACTTGAGACTGAATGCAGAAGACTAAAAACCAGAGCCACTCCACCTTCCTCCACTTATGTCGAATCTCTCACTGATAGTCAATCAGACGGTGGAGAGCGTTTGATTGCTGTGGATATTGACTCCCATAAGATCCAATTTAAGAATGAAAAGGGCACTGTCAGTAATCTACCTTCTTCCATCGAAATATCTCTCATGGACGATTTTCTCGAGATGGAACGACTTGCTGCCATGCCTGAGTCTGAAACTGGAGATGTATACGCAGGATCAGAGGCCATTGATGAAGCCATGGCCAGAGAAAGTTCCTTGAGAGTTGAAATTGAGACATTGATGTCGCAGACTATGGAAATGGAAGAGAAGCTAGAGAAGGTGGAGGATTTGAATACTGAACTAGAAGAGAAGTTGGTCAAGATGAAAGAAGAGAAAGACGAACTGGAACAGAAGTTAGAAAAGATGAAAGAAGAGAAAGATGAACTGGAAAAAAGGTTAGAAAAGATGAAAGAAGAGAACCATGAGCTAGAAGAGAAGTTTGAGAAAATAAAGACAGACAAAGCTGATATGGAGATTTCTCTTTACAAAAGTAAAGACAGTACAAAGAAATCAGAGCTTCAGCTGAAGGAAGCAGAAAAAAAGATGGAAGAGCTCCAAATGGAGCTAATTATTGCAAATGATTCAAAACAAAGTATGGAAGCTCTACTAGTAAGTATGGAAGCCGAGTCTCAAACCCTGTCGGACAAGTTTATTTCGTTGGAACATGAGGTCGAGAAGGAGAGAATTTTTTCGGAGGAAATGAAAATCCAGTGCCATGAATTAGAGGAGGAACTGATTAGAATGAAAGAAGATAAAATCAGGCAAATGACAAGTAACGAGCCAAAGATAAAGCAGGAGGACTTGGCTGCGGCTGCCGGAAAACTAGCTGACTGTCAAAAGACGATAGCTTCACTCGGGAATCAACTCAAATCTCTAGCAACTTTAGACGACTTTCTAACCGACATGTCATCAGTAACAAAACTCTCCGAAGGTATAAGCCAACCTTCGAAAGCTGGTGTACACACGCACCAACAGTCAAATGGATCGTTTTCGCCTAAAAGAGTGGATTACTCGGAAATAGTTGACATTACTCCAAATGGTAAGAGTGAAGATACCTCTCCACCTTCATCAACATCTTCCTCGGCTTCGTCAGTTTTAGTGTCAGCTCATGTTATTTCGGAGAAAAACCGAAACGGGTTTGCCAAGTTTTTCTCGAGGACCAAGAGTGGAATAAGACTGGAGATTTAG 2499 42.42 MNGCRSEEIPNCYFHPQEKLVGVCALCLNEKLIFLASKQGYFSSGRTRSCSLRSTPSSTSFSKIFAFTNFLNRLEFRHSKPEYSDLDASPCHDDSFISMKFEENGVASWEENKNPKVTLQECKMTWNQSLSKEEDASKANNINKTVTEVGKSRAPLRWRKRIGHLFHLMRSKRSSKANMCHEAFTESHSGEALLGEVMSNDLTIKEGVDGDLATKEDSNNNVQSLSEKLSAALMNVRAKEDLVKQHAKVAEEAIAGWEKAENEVIVLKQQFGSAIKQKSALEDQVSHLDAALKECVRQLRQTRDEQEQKIQEAVKDKINDFESAKLDLEQQLLEIQTKAKATHKKSAHTNLELSNKIESLEKENSALKLELYAQSEELEIRTIERDLSTQAAETASKQNLECLKKVARLETECRRLKTRATPPSSTYVESLTDSQSDGGERLIAVDIDSHKIQFKNEKGTVSNLPSSIEISLMDDFLEMERLAAMPESETGDVYAGSEAIDEAMARESSLRVEIETLMSQTMEMEEKLEKVEDLNTELEEKLVKMKEEKDELEQKLEKMKEEKDELEKRLEKMKEENHELEEKFEKIKTDKADMEISLYKSKDSTKKSELQLKEAEKKMEELQMELIIANDSKQSMEALLVSMEAESQTLSDKFISLEHEVEKERIFSEEMKIQCHELEEELIRMKEDKIRQMTSNEPKIKQEDLAAAAGKLADCQKTIASLGNQLKSLATLDDFLTDMSSVTKLSEGISQPSKAGVHTHQQSNGSFSPKRVDYSEIVDITPNGKSEDTSPPSSTSSSASSVLVSAHVISEKNRNGFAKFFSRTKSGIRLEI 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1759525 1769076 - BLOR08672 Blo18g00184 73488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00184 832 Pfam Filament-like plant protein, long coiled-coil 239 337 IPR008587 -
Blo18g00184 832 Pfam Filament-like plant protein, long coiled-coil 574 731 IPR008587 -
Blo18g00184 832 Pfam Filament-like plant protein, long coiled-coil 343 417 IPR008587 -
Blo18g00184 832 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 187 831 - -
Blo18g00184 832 Coils Coil 514 597 - -
Blo18g00184 832 Coils Coil 399 419 - -
Blo18g00184 832 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 187 831 - -
Blo18g00184 832 Coils Coil 215 235 - -
Blo18g00184 832 Coils Coil 292 338 - -
Blo18g00184 832 Coils Coil 668 688 - -
Blo18g00184 832 MobiDBLite consensus disorder prediction 750 770 - -
Blo18g00184 832 Coils Coil 343 377 - -
Blo18g00184 832 MobiDBLite consensus disorder prediction 750 801 - -
Blo18g00184 832 Coils Coil 605 639 - -
Blo18g00184 832 MobiDBLite consensus disorder prediction 782 801 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00184 - - - pop:7466467 565.459
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00890 Blo18g00184 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01294 Blo-Chr1:49689239 Blo18g00184 Blo-Chr18:1759525 3.65E-37 dispersed
Blo12g00890 Blo-Chr12:27077103 Blo18g00184 Blo-Chr18:1759525 6.36E-06 dispersed
Blo12g01127 Blo-Chr12:28896379 Blo18g00184 Blo-Chr18:1759525 4.61E-38 dispersed
Blo05g00560 Blo-Chr5:12396986 Blo18g00184 Blo-Chr18:1759525 1.58E-100 transposed
Blo12g00169 Blo-Chr12:10968698 Blo18g00184 Blo-Chr18:1759525 3.77E-16 transposed
Blo17g00177 Blo-Chr17:1828379 Blo18g00184 Blo-Chr18:1759525 9.88E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g262 . Blo12g00890 . Bda03g00283 . . Bma04g00240 . Cmo04g02471 . . . . . . Cpe06g00076 . . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 . Cone7ag1530 Cone17ag1283 Cone20ag0443 Lsi04g01729 . . . . Blo18g00184 . . . . . . . . . . . Car04g02288 Car09g00102 Cpe01g02050 . . . . . . . . . . . . . . . Lsi08g00434 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00184 Blo_Chr18 FPKM 1.14739 1.578912 2.929788 1.918264 2.096716 2.311762 1.867244 4.061979 4.083792 3.233782