Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00188 ATGATCCGAGTAGTCGGCTCAGCTATGGATTTAGCCATGGAGAATTCCGATTGGGATCACCATAATTTGTCTGTGTATAGTTCTGGTAGCAGAACCACCATTGAAGAGGGAGTTGATGGTCACAACTGGAGCAACAACTGGTCGCCCGTGATGGATTGGGATGCTTTCTCTCCTTGTCAAGACGATGACTTCAAAGACTTTATGGAATCCATATTTGAGGAAGAGCGAGTTTACCCACCATCTTCAAGCAACTGCAACTCTTCGGGTTCGAGTTCAGAGATGATGTCGGTGGAGGATCCGGAAGAAACTGCCATTAACGGAGGAGGAGAAGATGTCAAAGGGTTGAGACTGGTTCACCTCCTGATCGCCGCCGCCGAGGCTATCATCGGAGCTAACGAAGGTCGGGAGCTTGCTCGGGTGATATTGGTTCGGCTCAAAGAGTTGGTTTCTCTGGCCGGCGGAACCACCATGGAAAGGCTTGCTGCTGATTTCACCGAAGCTTTGTACGGTTTGCTAGAGGGAACCCGGCTTAGTTCTGGTTCAAACAGTAGGTCCCACAGCCGGTTCATAACTTGTGGACCCCACATCCATGATCAGAATCCAACGGACGCGATCGCAGCCTTTCAGCTTCTTCAAGATATGTCTCCCTACGTCAAGTTCGGACATTTCACTGCCAATCAAGCGATTCTTGAAGCAGTGGATGATGATCGGAGGGTCCACATTGTGGATTATGATATCATGGAGGGGATCCAATGGGCATCTTTGATGCAAGCGTTGGTGTCTAGGAAAGACGGTACGCCCGCGCCGCATCTTAGAATTACCGCGCTATCGAGAAGTGGGACCGCGCGAAGTTCAATCGGGACCGTCCAAGAAACAGGCCGCCGTCTGATTGCCTTCGCGGCGTCGATCGGTCAGCCGTTTTCTTTTCATCAGTGCAGACTGGATTCCGAGGAGACATTTCGACCGTCCGTTTTGAAGCTAGTCAAAGGAGAAGCGTTGATCATAAACTGCATGCTCCACCTCCCTCATTTCAACTACCGGGCACCCGATTCGGTGGCTTCGTTTCTTTCCGGATCCAAGGCCCTCAACCCGAGACTGGTCACTCTGGTGGAAGAAGAAGTGGGACGTACAGACGGGACCTTCGCGTCTCGATTTATGGACTCATTGCACCATTACTGCGCCATCTACGACTCGCTCGAAGCTGGTTTTCCGATGAATTACCCGGCTCGAGCTCTGGTGGAGCGAGTGTTCATGGGTCCTCGGATATCCGGGACGTTGAGCCGGATCTACCGGGACAGAGAGGATGAGAAACAAGGGTCGTGGGCGGACTGGTTGGCTGCGGCGGGGTTTAGATCGGAGAGAATAAGCTTTGCCAATCACTGCCAAGCAAGACTGTTGGTGGGTCTGTTCAATGACGGGTATAGAGTGGAAAATCTGGGTGAGAATAGGCTTGTTTTAGGATGGAAATCAAGGCGTCTACTTTCTGCTTCTGTTTGGACGTCTCCTTCTTCACCTTCTTCTTCAAACTAG 1530 51.44 MIRVVGSAMDLAMENSDWDHHNLSVYSSGSRTTIEEGVDGHNWSNNWSPVMDWDAFSPCQDDDFKDFMESIFEEERVYPPSSSNCNSSGSSSEMMSVEDPEETAINGGGEDVKGLRLVHLLIAAAEAIIGANEGRELARVILVRLKELVSLAGGTTMERLAADFTEALYGLLEGTRLSSGSNSRSHSRFITCGPHIHDQNPTDAIAAFQLLQDMSPYVKFGHFTANQAILEAVDDDRRVHIVDYDIMEGIQWASLMQALVSRKDGTPAPHLRITALSRSGTARSSIGTVQETGRRLIAFAASIGQPFSFHQCRLDSEETFRPSVLKLVKGEALIINCMLHLPHFNYRAPDSVASFLSGSKALNPRLVTLVEEEVGRTDGTFASRFMDSLHHYCAIYDSLEAGFPMNYPARALVERVFMGPRISGTLSRIYRDREDEKQGSWADWLAAAGFRSERISFANHCQARLLVGLFNDGYRVENLGENRLVLGWKSRRLLSASVWTSPSSPSSSN 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1809599 1811128 - BLOR08676 Blo18g00188 73492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00188 509 ProSiteProfiles GRAS family profile. 108 500 IPR005202 -
Blo18g00188 509 Pfam GRAS domain family 117 500 IPR005202 -
Blo18g00188 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 500 IPR005202 -
Blo18g00188 509 PANTHER SCARECROW-LIKE PROTEIN 26 31 500 IPR030028 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00188 - - - cit:102620887 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00188 Blo-Chr18:1809599 Blo10g00896 Blo-Chr10:27940535 8.09E-50 dispersed
Blo18g00188 Blo-Chr18:1809599 Blo16g00714 Blo-Chr16:27676282 6.81E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1387 . . . . . . . . Blo18g00188 . Bda01g01419 Bpe02g01634 . Bma01g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011232 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13573 PF03514 GRAS 5.30E-99 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00188 Blo_Chr18 FPKM 133.718063 140.463074 117.542641 116.950775 183.75795 215.422928 182.271484 157.537308 159.762741 150.956955