Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00192 ATGGCTTCCCACCTTCATTTTCTTCCCCAAGTTTTGTTTCTATTCATTTTAATATCAGCAGGAATAAAACTCTCCGACTGTGCAAGAATACTCACCATAGTCAACAACTGCAACGAGACAATCTGGCCGGGAATCACTCCAGGAGAAAATTTTAACGGCGGAGGCTTTCAGCTGAAATCCGGCCAGTCCCTCGTCTTCACCGCCCCAGTCGGTTGGTCCGGTCGGATATGGGGTAGAACCGGGTGCAACTTCGACAAAAACGGCAACGGCACCTGCCAAACCGGCTCCTGCGGCTCTTCCCTCAAGTGCACGTCCTCCGGCAAAACTCCCGAATCTCTCGCCGAATTTACTCTTGCAGCGGTGGATTTCTACGACGTCAGCCTCGTGGATGGCTTCAACTTGCCCATCATCGTCACCCCCATTAACGACAAAGGAAACTGCAGCATCGCCGGGTGCGACGGCGATCTAAGAACCAGTTGTCCAACTGAACTTTCAGTAAAATCGAACGGGAAAACCATAGGTTGCCGGAGCGCCTGCGACGTGTTCAACACCGACGAGTATTGCTGCAGAGGGGTATACGGAAACCCAGTAATCTGTCAGCCAACGTACTATTCGAAGAAATTTAAGGAGATCTGTCCGTCAGCGTATAGCTACGCTTACGACGATCCGACCAGCATCTTCACTTGCTCCGGCACTGATTACGTCATCGCTTTCTGCTCTTCCAGGTTTAGCGTTCCTGAAGCAGCGCCTTTCACCGCGGTTCTCAAATTCGCCGCAGAAGAGTTCAAGGTGCCTCCTCAAACCAGCGCTATCATCACCAATGTTGCAGATGGTGTTGGAATCAATCCTCAACAAAGTGCAGGCAATGTCTTTCTCAAACATGGCTCGGAACTTCGACTGATTCCTCGAGATCGAGTAGGAGCTGTAGGCTTATTTGAAGCTTTGCTCTCTTGA 954 50.73 MASHLHFLPQVLFLFILISAGIKLSDCARILTIVNNCNETIWPGITPGENFNGGGFQLKSGQSLVFTAPVGWSGRIWGRTGCNFDKNGNGTCQTGSCGSSLKCTSSGKTPESLAEFTLAAVDFYDVSLVDGFNLPIIVTPINDKGNCSIAGCDGDLRTSCPTELSVKSNGKTIGCRSACDVFNTDEYCCRGVYGNPVICQPTYYSKKFKEICPSAYSYAYDDPTSIFTCSGTDYVIAFCSSRFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNVADGVGINPQQSAGNVFLKHGSELRLIPRDRVGAVGLFEALLS 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1864808 1869145 + BLOR08680 Blo18g00192 73496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00192 317 Gene3D Thaumatin 30 179 IPR037176 -
Blo18g00192 317 CDD TLP-PA 30 239 - -
Blo18g00192 317 SUPERFAMILY Ubiquitin-like 243 308 IPR029071 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Blo18g00192 317 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Blo18g00192 317 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
Blo18g00192 317 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Blo18g00192 317 Gene3D - 208 309 - -
Blo18g00192 317 SMART tha2 31 240 IPR001938 -
Blo18g00192 317 Pfam Thaumatin family 35 239 IPR001938 -
Blo18g00192 317 Pfam Ubiquitin fold modifier 1 protein 243 301 IPR005375 GO:0071569
Blo18g00192 317 PANTHER OS03G0233200 PROTEIN 8 254 IPR001938 -
Blo18g00192 317 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00192 - - - jre:108986396 428.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00192 Blo-Chr18:1864808 Blo04g00882 Blo-Chr4:10098299 1.36E-77 dispersed
Blo04g01321 Blo-Chr4:28962392 Blo18g00192 Blo-Chr18:1864808 2.11E-109 transposed
Blo17g00186 Blo-Chr17:1904974 Blo18g00192 Blo-Chr18:1864808 4.78E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g311 . . . . . . . . Cmo04g02451 Cmo15g00714 . . . . . . . . . . . . . . . . . . . . . Cone4ag1381 Cone7ag1550 . . . . . . . Blo18g00192 . Bda01g01414 Bpe02g01627 . . . . . . . . Car04g02270 Car15g00646 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00192 Blo_Chr18 FPKM 2.382785 2.420208 6.160786 6.301409 8.4111 8.928389 9.675025 8.35541 7.981717 9.973939