Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00195 ATGCATTCTTTCTGCTGTGTCTCCACCGTATCCGATCACTCTCCGGCGAAGCAGTCGCCTGCTTTACTGGACCTTCCGATGTATCCGTCGGTTTCGGCGGCTTCTGTCGCCGGTAGATCTGATTCGATGATTCGAATTAATAATAACAATCAAAACCAAAATCATGTCAACAGTAACCATGGACAGCTTAGTCAGCGGGCCATTGCGGCCGCTGAAATCCTTGCTCGACCTTCGTCCGCGAGGGAGCAACCGGTTGACGTGAAGATCAATGATATTGTAGGCAACGGCATCTGCGGTGTATTGCACAAATGGGTGAATTACGGCAAAGGTTGGCGACCTCGTTGGTTTGTGCTGCAAGATGGCGTTTTGTCTTACTACAAAATTCACGGGCCAGACAAAATCGTGGTAAATCGAGAAACAGAGAAGGGATCGAAAGTTATCGGTGAAGAATCAATGCGAAGGATTTCGCGGCATGAGAACGGCACCTTCATGTCCAACTCTCAGCAGCAACTCAGGCGCAAGCCTTTTGGAGAAATTCATCTCAAGGTATCCTCTATTCGTGAAAGCCGATCAGATGACAAAAGATTCTCAATTTATACTGGCACCAAAAGGCTTCACTTAAGGGCCGAAACACGTGATGATCGAGTGTCATGGATGGAGGCATTGCAAGCAGTGAAGGACATGTTCCCAAGAATGTCAAACAGTGAACTTATGGCACCTGTGGACAATGTGACTGTGTCAACTGAAAAACTCAGACAACGCCTCTTAGAAGAAGGTTTGAACGAAGCAGCAATTCAAGACAGTGAGCAAATTATGAGGAATGAGTTTGCATCCATGCAGACCCAACTTTATTTACTTAAGCAGAAGCAGTGGCGCCTAACAGACACTCTGCGGCAGTTAGAGACAGAAAAGGTTGATTTGGAAAATACAGTTGTTGACGAGAGCCAAAAACAGTGGAATGATTGTGGAGCTTCAACCATATCAAGGCAGGAAAAATGTAGCGATATAAGTGCAAGTGAATCTGACGACGACAATGAGAGAGTTGATGCAGCTGAAGAAGAAACAGATGAAGAAGATAATACGTTTTTTGACACTCGTGATTTTTTATCTTCAAGTTCTTTTAAAAGTAGTGGATCTGATTACAGAATATCATCCTTCTCTTCGGATGATGAAGTGTTTGATTACGCTGGATTTGATGCTGATGGGGATCCATCTATTAGATCTGTTGGAACTAACTATCCTTATGTTAAGCGGCGTAAGAAGTTACCTGACCCAGTTGAAAAGGAGATGGGTGTCAGTCTATGGTCAATGATCAAGGATAACATCGGGAAAGATCTCACTAAAATTTGTCTTCCTGTTTACTTCAATGAGCCTCTTTCTTCTTTACAAAAATGTTTTGAGGACTTGGAATATTCTTATCTTATAGACCAGGCATGTGAATGGGGACGTAAGGGTAATAATCTTATGAGGATTCTTAATGTTGCTGCTTTTGCTGTATCTGGATATGCTTCAACAGAAGGACGAATTTGCAAACCGTTTAATCCACTATTAGGAGAAACATATGAAGCTGACTATACAGATAAAGGTCTCAAGTTTGTTTCCGAGAAGGTCAGCCATCACCCAATGATAGTTGCGTGCCATTGTCAAGGTACTGGATGGAAATTTTGGGGTGATAGTAACCTAAAAAGTAAATTTTGGGGACGTTCAATACAACTTGATCCTGTTGGTGTCTTGACTTTGGAATTTGATGATGGAGAAGTTTTTCACTGGAGCAAGGTCACAACATCAATATACAACCTTATATTGGGGAAGCTGTATTGTGATCACTATGGTACTATGCGCATACAAGGAAATAAAGAATATTCTTGCAAGCTAAAGTTTAAGGAGCAGTCCATAATTGACAGAAACCCTCACCAATTCTACTGGAAGTTTTGTGGTGAAATATACTCTGTAATAGTAGCTAAAAAGAAATATGTTTTGGAGCTGACAAAAGTACATGGTATTGTTCAAGATAGGAATGGTAAAACAGTCGCTACTTTATTTGGAAAATGGGATGAAAACATGTATTATGTGAATGGAGACTGTTCCAAGAAGGGAAAAGGATTTGATCCTTCAACCCAGACCCATCTACTATGGCAACGGAGCAAGCCACCACAGTTCCCTACTCGATATAACCTGACGCGCTTTGCCATGACCTTAAATGAGTTGACACCCGGATTAAAGGAAAAGTTACCACCTACAGATTCAAGACTAAGACCGGACCAAAGGTATTTGGAAAATGGAGAATTTGAAATGGCCAATTCAGAGAAGTTGCGGCTGGAGCAGCGGCAGCGACAGGCTAGGAAAATGCAAGAGAGGGGATGGAAACCAAGATGGTTTGCAAAGGATAAAGGAAGTGATTCTTATCGATACATCGGTGGGTATTGGGAGGCTAGAGAACAGCGAAACTGGGATTCATGTCCTGACATTTTTGACCAAACCTCTTCTGATCACCTACTTGAGTAA 2505 42.28 MHSFCCVSTVSDHSPAKQSPALLDLPMYPSVSAASVAGRSDSMIRINNNNQNQNHVNSNHGQLSQRAIAAAEILARPSSAREQPVDVKINDIVGNGICGVLHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNRETEKGSKVIGEESMRRISRHENGTFMSNSQQQLRRKPFGEIHLKVSSIRESRSDDKRFSIYTGTKRLHLRAETRDDRVSWMEALQAVKDMFPRMSNSELMAPVDNVTVSTEKLRQRLLEEGLNEAAIQDSEQIMRNEFASMQTQLYLLKQKQWRLTDTLRQLETEKVDLENTVVDESQKQWNDCGASTISRQEKCSDISASESDDDNERVDAAEEETDEEDNTFFDTRDFLSSSSFKSSGSDYRISSFSSDDEVFDYAGFDADGDPSIRSVGTNYPYVKRRKKLPDPVEKEMGVSLWSMIKDNIGKDLTKICLPVYFNEPLSSLQKCFEDLEYSYLIDQACEWGRKGNNLMRILNVAAFAVSGYASTEGRICKPFNPLLGETYEADYTDKGLKFVSEKVSHHPMIVACHCQGTGWKFWGDSNLKSKFWGRSIQLDPVGVLTLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRIQGNKEYSCKLKFKEQSIIDRNPHQFYWKFCGEIYSVIVAKKKYVLELTKVHGIVQDRNGKTVATLFGKWDENMYYVNGDCSKKGKGFDPSTQTHLLWQRSKPPQFPTRYNLTRFAMTLNELTPGLKEKLPPTDSRLRPDQRYLENGEFEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGSDSYRYIGGYWEAREQRNWDSCPDIFDQTSSDHLLE 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1896298 1902715 + BLOR08683 Blo18g00195 73499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00195 834 CDD PH_ORP_plant 97 234 - -
Blo18g00195 834 Gene3D - 755 828 - -
Blo18g00195 834 ProSiteProfiles PH domain profile. 94 227 IPR001849 -
Blo18g00195 834 MobiDBLite consensus disorder prediction 345 361 - -
Blo18g00195 834 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 74 828 IPR000648 GO:0008289
Blo18g00195 834 SUPERFAMILY PH domain-like 97 233 - -
Blo18g00195 834 Coils Coil 297 317 - -
Blo18g00195 834 Gene3D - 95 229 IPR011993 -
Blo18g00195 834 Gene3D - 519 718 - -
Blo18g00195 834 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 74 828 - -
Blo18g00195 834 Pfam Oxysterol-binding protein 433 813 IPR000648 GO:0008289
Blo18g00195 834 SMART PH_update 95 229 IPR001849 -
Blo18g00195 834 Pfam Pleckstrin homology domain 99 223 - -
Blo18g00195 834 Coils Coil 766 786 - -
Blo18g00195 834 MobiDBLite consensus disorder prediction 330 362 - -
Blo18g00195 834 SUPERFAMILY Oxysterol-binding protein-like 429 826 IPR037239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00195 K20456 OSBP; oxysterol-binding protein 1 - csv:101214552 1300.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00190 Blo18g00195 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00415 Blo-Chr3:12096021 Blo18g00195 Blo-Chr18:1896298 0 dispersed
Blo18g00195 Blo-Chr18:1896298 Blo19g00281 Blo-Chr19:17096912 0 dispersed
Blo06g00836 Blo-Chr6:31592069 Blo18g00195 Blo-Chr18:1896298 0 transposed
Blo17g00190 Blo-Chr17:1927789 Blo18g00195 Blo-Chr18:1896298 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00195 Blo_Chr18 FPKM 10.09376 9.989773 9.671981 9.739667 11.262278 8.824245 10.052732 15.820683 14.538556 16.483976