Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00197 ATGGCGGCTACCGTATCGCGGCAGTTACCGGCTTTGAACGGTAGCGTTGTTCATACTTTCAAATCTGGTCCTAACCACCGCTCGGACTCCCCGCTGAGGGGATTTAATTTTTCGCCGAGTTCTGAGCTTTCTGTCCCGAAGAGAGCTAATGGGCTCCAAGAGGATGATTATTCCAGTGATGAAGAGGATGAGAATGAATTTGGCCATTTGATTCTGAAGGGTAACAGGGAATTGGAGCCGTCGGTCTTTGACGGAAGAGATGAGGGAACGGCTGATAGTTGGATCAAGCGAAACTCTACTATGGTCCGTCTCACCGGGAAGCACCCCTTCAACGCTGAGGCTCCGTTAAACCGATTAATGAACCACGGCTTTATCACTCCGGTGCCTCTCCACTACGTCAGAAACCACGGCGCCGTTCCGAAGGGCGACTGGGCTACATGGACCATCGAAGTCACCGGCCTCGTCAAACGGCCGGCCAAGTTCACGATGGATCAGCTGGTCAATGAGTTCCCTTCCAGAGAATTCCCGGTGACCCTCGTTTGCGCCGGGAACCGGCGCAAGGAGCAGAACATGGTCAAGAAAACCATCGGTTTTAACTGGGGAGCCGCAGGGGTCTCAACCTCCGTGTGGCGCGGGGTTCCGTTACGATACGTCCTCAAACGATGCGGCATCTTCGGCCGAAACAGTGGCGGCCTTAACGTCTGCTTCGAAGGCGCCGAGGACTTGCCAGGAGGCGGTGGGTCAAAGTACGGTACTAGCATTAAGAAAGAATTCGCCATGGATCCGGCTAGAGACATCATTTTAGCTTACATGCAGAACGGGGAGAGGTTATCGCCGGACCACGGATTTCCGGTGAGAATGATAATCCCGGGATTCATCGGCGGCCGTATGGTAAAATGGCTCAAACGAATCATCGTCACAACCAAAGAATCAGACAACCATTATCACTACAAGGATAACCGAGTTCTTCCCTCCCACGTCGACTCCGAGCTAGCGAATACTGAAGCTTGGTGGTATAAGCCGGAGTATATAATCAACGAGCTGAACATAAACTCAGTCATAACAGCTCCCTGTCATGAAGAAATCTTGCCCATAAATTCATGGACCACTCAGCTGCCCTACACCTTGAGGGGCTATGCATATTCCGTAGCTCCGATCAAAGAAGTGGCACCGATCAAAGAAATAGCTCCGGCCAAACGCGCCGCCCTAGTTCCCCAACAAAAAATCCCATGCAAGCTCATCGCCATAACTTCAATCTCTCACGACGTTAGGATTTTCCGCTTCGCCTTACCATCTGACGATATGGTTCTCGGATTGCCCGTCGGCAAACACGTTTTTGTCTGCGCCAACATTGACGGGAAGCTCTGCATGAGAGCTTACACTCCATCGAGCCCGATTGACGAAGTCGGTTTCTTCGATCTTGTGGTGAAAGTTTACTTCAAGAATGTTCATCCAAAGTTCCCTAACGGAGGGCTCCTGTCCCAATATCTAGACTCTCTGCAACTAGGCGCCCAAATTGAAATAAAGGGTCCATTAGGCCACATAGAATACACCGGCCGGGGTAACTTCCTCGTCCATAAAAAGACAAAGTTTGCCAAAAAACTGGCCATGATAGCCGGTGGAACGGGAATAACGCCGATTTATCAAGTCGTTCAAGCCATTCTGAAGGATCCTGAAGATGAAACAGAAATGTTCATCGTCTTCGCTAACAGAACGGAAGATGACATTCTGTTAAGAGAAGAGCTCGATTCATGGGCAGAGCAGCACGAGAGATTAAAGGTCTGGTATGTAGTTCAAGAAAGCATAAAAGAAGGATGGAAGTACAGTATTGGCTTCATCACCGAGACCATCATGCGGGAGCATATTCCCGAAGGATCCGACAGCGTTTTGGCCCTGGTGTGTGGGCCGCCGCCGATGATTCAGTTCGCCGTGCAGCCAAACTTGGAAAAGATGAACTACGACATCCAGAATTCGATGCTCGTGTTTTAG 1989 50.48 MAATVSRQLPALNGSVVHTFKSGPNHRSDSPLRGFNFSPSSELSVPKRANGLQEDDYSSDEEDENEFGHLILKGNRELEPSVFDGRDEGTADSWIKRNSTMVRLTGKHPFNAEAPLNRLMNHGFITPVPLHYVRNHGAVPKGDWATWTIEVTGLVKRPAKFTMDQLVNEFPSREFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGVSTSVWRGVPLRYVLKRCGIFGRNSGGLNVCFEGAEDLPGGGGSKYGTSIKKEFAMDPARDIILAYMQNGERLSPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTKESDNHYHYKDNRVLPSHVDSELANTEAWWYKPEYIINELNINSVITAPCHEEILPINSWTTQLPYTLRGYAYSVAPIKEVAPIKEIAPAKRAALVPQQKIPCKLIAITSISHDVRIFRFALPSDDMVLGLPVGKHVFVCANIDGKLCMRAYTPSSPIDEVGFFDLVVKVYFKNVHPKFPNGGLLSQYLDSLQLGAQIEIKGPLGHIEYTGRGNFLVHKKTKFAKKLAMIAGGTGITPIYQVVQAILKDPEDETEMFIVFANRTEDDILLREELDSWAEQHERLKVWYVVQESIKEGWKYSIGFITETIMREHIPEGSDSVLALVCGPPPMIQFAVQPNLEKMNYDIQNSMLVF 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1927631 1930913 - BLOR08685 Blo18g00197 73501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00197 662 Gene3D - 513 662 IPR039261 -
Blo18g00197 662 SUPERFAMILY Riboflavin synthase domain-like 402 518 IPR017938 -
Blo18g00197 662 MobiDBLite consensus disorder prediction 1 47 - -
Blo18g00197 662 Pfam Mo-co oxidoreductase dimerisation domain 343 382 IPR005066 GO:0016491|GO:0030151
Blo18g00197 662 Gene3D - 106 346 IPR036374 -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 630 638 - -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 503 517 - -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 458 465 - -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 536 555 - -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 574 585 - -
Blo18g00197 662 PRINTS Cytochrome B5 reductase signature 437 448 - -
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 102 116 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 188 200 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 345 357 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 294 307 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 376 390 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 177 188 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 261 277 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 124 140 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 203 218 IPR008335 GO:0016491
Blo18g00197 662 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Blo18g00197 662 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 84 345 IPR036374 -
Blo18g00197 662 MobiDBLite consensus disorder prediction 1 65 - -
Blo18g00197 662 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 153 188 IPR022407 GO:0043546
Blo18g00197 662 Pfam Oxidoreductase molybdopterin binding domain 136 315 IPR000572 -
Blo18g00197 662 Pfam Oxidoreductase FAD-binding domain 411 517 IPR008333 -
Blo18g00197 662 PANTHER NITRATE REDUCTASE 62 383 - -
Blo18g00197 662 PANTHER NITRATE REDUCTASE 395 662 - -
Blo18g00197 662 CDD cyt_b5_reduct_like 411 654 - -
Blo18g00197 662 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 406 518 IPR017927 GO:0016491
Blo18g00197 662 PANTHER NADH-CYTOCHROME B5 REDUCTASE 62 383 IPR001834 GO:0016491
Blo18g00197 662 PANTHER NADH-CYTOCHROME B5 REDUCTASE 395 662 IPR001834 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 630 638 IPR001709 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 458 465 IPR001709 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 536 555 IPR001709 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 574 585 IPR001709 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 606 622 IPR001709 GO:0016491
Blo18g00197 662 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 562 571 IPR001709 GO:0016491
Blo18g00197 662 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 506 657 IPR039261 -
Blo18g00197 662 Gene3D Translation factors 398 512 - -
Blo18g00197 662 Pfam Oxidoreductase NAD-binding domain 537 644 IPR001433 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00197 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - vvi:100264320 639.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00195 Blo18g00197 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00197 Blo-Chr18:1927631 Blo09g00346 Blo-Chr9:13906357 1.47E-36 dispersed
Blo17g00195 Blo-Chr17:1969855 Blo18g00197 Blo-Chr18:1927631 0 transposed
Blo17g00194 Blo-Chr17:1969001 Blo18g00197 Blo-Chr18:1927631 1.35E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00197 Blo_Chr18 FPKM 2.087301 2.863353 3.773484 2.989926 6.834123 6.729826 6.739007 2.196909 2.106153 1.743869