Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00206 ATGGGGGCTTTTTTGAGCTTGAATAGACACAAGGCTAGTAGAAGCCACGATGATGATTCGTCTCGGAATTACCCTGTTAAGAGACAGAGAGTGCAATCGCCACATTACGATGAGAGCCCGAGATTGATTCCAAGTCTCCCAGATGAGTTATCTTTTCATATTCTTGCTCGTATTCCGAGATTTTACTATTTGAACTTGAAGTTAGTATCAAGAAAGTGGAAGACGACTATCACAAGCCAAGAATTATATGACTTGAGAAAAAACCTCGGGAAGACTGAAGAATGGTTATATCTACAAACCAAAGTTGAGGAGGAAAAACTTCTGTGGCATGGTTTGGATCCCTTGTCTAAAAAATGGCAGAGGCTTCCTACAATGCCCACCAAGGATGCATGGGATAAAATGCCCTTTTGTGGCTGCGCAGTTGCAGCTCTTGACAGATGCTTGTACGTACTTGGTGGGTTCTCTGGAGCTTTCACAACGAGCCAAGTTTGGCGATTCGATCCGACCCAAAATACTTGGGAGGAAGTACAACGCATGTCTGTGGGCAGAGCATATTGTAAAACGGGGGTCTTAAATAGTAAACTTTATGTTGTTGGGGGCGTGAATCGAGGCCGAGATGGGTTGAGTCCTCTTCAATCGGCTGAAGTTTTCGACCCTTCCACCAAGACATGGTCTCAAGTCCCTAGCATGCCATTTTTGAGAGCTAGAGCCTTACCCACCGCCTTTTTGGTCGATATGCTAAAACCAATCGCCACCGGATTGACTTCCTACATGGGTCGATTGTGTGTCCCCCAAAGCTTGTATTCATGGCCATTTTTCCTTGATGTTGGAGGGGAAATGTTCGAGCCGGAAACTAACTCATGGGTCGACATGCCTAATGGCATGGGTGAGGGCTGGCCCGCCCGCCAAGCTGGCACGAAGCTAAGCATAGTTGTGGACGGTGAATTATACGCCTTCGACCCTTCTACCTCTCAAGATAGTAGTAAAATCAAGGTATATGATCAGTTGGAAGATACTTGGAAAGTTGCCATTCAAAAGATCCCCATGTGTGATTCTTCAGATCAAGAGCATCCATCATTATTGGCCGGTCTTCACGGAAAGCTCCACGTCATCACGAAAGATTCCAATCATCGGGTCGTAATTCTACTGGCCGACCTTCGTGAGAACGATTGTCAATCTCCATCGTCAAGTTCGATTCCTTTTCGGGAAAATTTTGTTTCGTTTTCGGATGCAGATGCTGTCGTTTGGAAGGTCATCGCTGAGCGGGATATCGGATCAGCCGAACTTGTAAGTTGTCAAGTTCTGGATCTATAG 1314 45.89 MGAFLSLNRHKASRSHDDDSSRNYPVKRQRVQSPHYDESPRLIPSLPDELSFHILARIPRFYYLNLKLVSRKWKTTITSQELYDLRKNLGKTEEWLYLQTKVEEEKLLWHGLDPLSKKWQRLPTMPTKDAWDKMPFCGCAVAALDRCLYVLGGFSGAFTTSQVWRFDPTQNTWEEVQRMSVGRAYCKTGVLNSKLYVVGGVNRGRDGLSPLQSAEVFDPSTKTWSQVPSMPFLRARALPTAFLVDMLKPIATGLTSYMGRLCVPQSLYSWPFFLDVGGEMFEPETNSWVDMPNGMGEGWPARQAGTKLSIVVDGELYAFDPSTSQDSSKIKVYDQLEDTWKVAIQKIPMCDSSDQEHPSLLAGLHGKLHVITKDSNHRVVILLADLRENDCQSPSSSSIPFRENFVSFSDADAVVWKVIAERDIGSAELVSCQVLDL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2024436 2025857 + BLOR08694 Blo18g00206 73510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00206 437 MobiDBLite consensus disorder prediction 1 40 - -
Blo18g00206 437 SMART fbox_2 46 86 IPR001810 GO:0005515
Blo18g00206 437 Pfam F-box domain 44 83 IPR001810 GO:0005515
Blo18g00206 437 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 128 436 - -
Blo18g00206 437 Gene3D - 106 357 IPR015915 GO:0005515
Blo18g00206 437 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Blo18g00206 437 MobiDBLite consensus disorder prediction 10 35 - -
Blo18g00206 437 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 128 436 - -
Blo18g00206 437 SUPERFAMILY F-box domain 41 83 IPR036047 GO:0005515
Blo18g00206 437 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 127 - -
Blo18g00206 437 Pfam Kelch motif 135 180 IPR006652 GO:0005515
Blo18g00206 437 Pfam Kelch motif 183 231 IPR006652 GO:0005515
Blo18g00206 437 SUPERFAMILY Kelch motif 106 349 IPR015915 GO:0005515
Blo18g00206 437 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 127 - -
Blo18g00206 437 SMART kelc_smart 194 244 IPR006652 GO:0005515
Blo18g00206 437 SMART kelc_smart 147 193 IPR006652 GO:0005515
Blo18g00206 437 Gene3D - 41 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00206 - - - vvi:100248808 617.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01295 Blo-Chr4:27476362 Blo18g00206 Blo-Chr18:2024436 3.83E-166 dispersed
Blo05g00353 Blo-Chr5:4188479 Blo18g00206 Blo-Chr18:2024436 2.05E-26 dispersed
Blo06g00439 Blo-Chr6:25067870 Blo18g00206 Blo-Chr18:2024436 3.48E-26 dispersed
Blo18g00206 Blo-Chr18:2024436 Blo08g00072 Blo-Chr8:712517 6.94E-38 dispersed
Blo18g00297 Blo-Chr18:3110882 Blo18g00206 Blo-Chr18:2024436 6.73E-22 dispersed
Blo18g00206 Blo-Chr18:2024436 Blo14g00257 Blo-Chr14:2400126 7.88E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003561 2 4 2 4 3 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 0 4 6 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00206 Blo_Chr18 FPKM 25.437811 36.202614 44.807884 49.666267 32.041668 34.050621 35.971256 83.499619 84.945724 82.396812