Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00215 ATGAAGCGTTTTACAAAGAAGATGCAGATTTTAATATACACAGTTTCAAGTTTAGCCATGAAAGGCGGGGAGTTTATGTTCCCAGAGACTTTCTTCCGACGGTTGACTCGTGAACCGAGTGGGAAAACTAAAGAAATGGATTTGATTGAAGGAGTCGGAGAGAGCTCGTCGCCGTCGCCGCCTAGGAGCTTTGGAGGTTTCTCTAACCACGATGTGCCGCTCGACGTGTATAACCGGCTGGTGGAGAGTAGAAACGAGGACGCTGTGTGCAATCCCGAGTTTCGCGAGCAGCTGGACGCTCACTTCCATCGCTTACCTCCTAGTTATGGATTAGATGTCAATATGGATAGAGTGGAGGATGTTTTGTTACATCAAAAGCTCCTTGCTTTAGCTAAGGACCCAAAGAATCGGCCTGTTTATCATATTCGTTTTCTAGAGGACTTTTGGTTACACGTAAGTTGTAGATCAGATAGCAATGGTGATCAAGAAATTTCAAGTAATATTTCTACTTCTGGGCCCTTTGGGGAAGCAGCTGATGAAAGAGTTCCTCCACCCCACAAGAGAGAATTACAGGATAAATTTGAGCCATGTTTCAGGCTTGAGGACTTGAATTTGGATGTTAAAAAGAATGGGGAGGACACAATTGACAGATATCTTCTTGAGAATTCTTCCAGAAGGCAAGATAACTCATATGTTTTTATTCACGAAATTATATTTTCTACGGTCGACAAACCAAAGCTTCTAAGCCAGCTTTCTTCATTGCTTTCTGATATAGGACTTAACATTCGCGAAGCGCATGTATTCTCAACAAATGATGGCTATTCGTTGGACGTTTTTGTGGTGGATGGATGGCCTATTGAGGATACAGATGGTTTATCTTGCGCCATGGATCAAGCAATTGCTAGATGCGAGGGTTCATGGTCTGGTTCGTCTAGTTGTCATAAATATTTGGAGAAAGCACTGGCATCCCTACCAAAATCAGGGGGTTGGGAAATAGATAGAAGATTATTAAAGATTGGTGAACGAATTGCATCTGGATCTTGTGGAGACTTGCATCGAGGAGTATATCTTGGTCAAGATGTAGCTGTTAAAATTCTTAGATCTGAACATTTAAATGATGCTCTGGAAGTTGAATTTGCTCAAGAAGTGGCAATTCTGAGAGAGGTCCGGCATAAAAATGTTGTTGGTTTCATCGGGGCGTGTACAAAGTCTCCTCATTTGTGCATAGTAACAGAATATATGCCAGGAGGGAGCCTTTACGGTTATTTGCATAAGAATCATAATGTCCTAAAGCTCTCTCAACTATTAAAATTTGCTATCGATGTCTGCCAAGGAATGGAGTACTTGCATCTAAACAACATTATTCATAGAGACTTAAAGACAGCAAATTTACTAATGGACACTCAAAATTGTAAAGAGGGAGAGATTACTCTTTTGGGAGCCTGCACTATTGATAACAGGTCTGACTCAGAATTTATTTTTGAATTTGTGTTTGATAGCCTGACTGGTAGTGATGCAATCCTTGTTGTCGTCACGTTCATAAATGGATCACAAATAATTGTTAAGGTTGCTGATTTTGGGGTTGCACGATTCCAAAACCAAGAGGGAGTGATGACTGCTGAAACTGGAACTTATAGATGGATGGCGCCTGAGGTTATAAACCACCAGCCTTATGATCAAAAGGCAGATGTTTTCAGTTTTGCTATCGTAATGTGGGAACTAGTGACAGCAAAGATTCCTTATGATTCCATGACTCCTCTACAAGCTGCTCTTGGAGTGAGACAGAAAGAAGTTACTCTTTTACTCTTTTACATGACTGGAGTCTGGAATATATCTCGAGAAGGTGGTATTAACCGTGAAGCTCAAGTGGGCTCTTCAGAGACATTATTGGCCAATGAGGAGGTACGTGACTTTGGAAACGAAGTTGCTATTATTTTGCATTCTGTCTCAGCAAATTTAAACGAAGAGGACGATGAGGAACTCCGATCAGCATGCCAATCCACTAGTGATGAAGAGATGGACATGGCAGAGAGTAGACTGAGACGCCAACCAGAAGCAGAGTGCACATTTGTTGGTATGGGGCTAGGCAAAAAATATAGTTCCTTGAATAAAATTAGAGAAGAAATTGTTGATTATGCAATGAATAATGGCAACCGCCTCGCCAAAGTACAACATGCCAGTAGAAATTGGAGCCCTCAGTTTGCAGGAGCTGCCCAGTTTGAGGTCAGCAACGGTACCGACATGTACTCTGTTGATTTGGAAAGGTGTACTTGTACATGTTACCGGTGGGAGTTGACCGGCATCCCGTGTGTGCATGTAATCCCGTGCATTCACTTCATGAGGAGATCTCCTGAGGATTTTGTGCATTGGTGCTATCACCGGGAAACATACATGGTGATGTACTCCCACTTTCTCCGCCCCCTTAATGGACCAATCGAGTGGCTTCCTGTGACGAATCTTGATCCAATTATCCCACCGCCTTTTAAAAGGCTTCCAGGAAGGCCGCGCGTCAGTAGAATACGGGATGTGGACGAGGCCCCCAGCCGGACAGTGCTAAGCAGAAGACATTTGAACGTCACTTGTGGGTGGTGTGGTAGTGTGGGGCACAATGCCCGCACGTGCGAAGGTGGAGGCCAGTCCAGTGCAGGGGCTGGCAGAGGCAACAGAGGGAGAGGCAGAGGCGGCAGAGGAAGGTCGGAGGACACCTTTATGGGGTTCAGAGTCCCCGAGACAGCTCCCGTGACAATTACTTCCCTAGTCCCTGAGACAATTCCTTCTCGAGTGTCTGAGACAGTTCCTGATAGAGTTCATGAGACGCAGGAGTCTGATGCGGAAGGTCCTCCCACACAAACGTACACAAATGTGGACCTTAACCTGCCATGA 2883 44.4 MKRFTKKMQILIYTVSSLAMKGGEFMFPETFFRRLTREPSGKTKEMDLIEGVGESSSPSPPRSFGGFSNHDVPLDVYNRLVESRNEDAVCNPEFREQLDAHFHRLPPSYGLDVNMDRVEDVLLHQKLLALAKDPKNRPVYHIRFLEDFWLHVSCRSDSNGDQEISSNISTSGPFGEAADERVPPPHKRELQDKFEPCFRLEDLNLDVKKNGEDTIDRYLLENSSRRQDNSYVFIHEIIFSTVDKPKLLSQLSSLLSDIGLNIREAHVFSTNDGYSLDVFVVDGWPIEDTDGLSCAMDQAIARCEGSWSGSSSCHKYLEKALASLPKSGGWEIDRRLLKIGERIASGSCGDLHRGVYLGQDVAVKILRSEHLNDALEVEFAQEVAILREVRHKNVVGFIGACTKSPHLCIVTEYMPGGSLYGYLHKNHNVLKLSQLLKFAIDVCQGMEYLHLNNIIHRDLKTANLLMDTQNCKEGEITLLGACTIDNRSDSEFIFEFVFDSLTGSDAILVVVTFINGSQIIVKVADFGVARFQNQEGVMTAETGTYRWMAPEVINHQPYDQKADVFSFAIVMWELVTAKIPYDSMTPLQAALGVRQKEVTLLLFYMTGVWNISREGGINREAQVGSSETLLANEEVRDFGNEVAIILHSVSANLNEEDDEELRSACQSTSDEEMDMAESRLRRQPEAECTFVGMGLGKKYSSLNKIREEIVDYAMNNGNRLAKVQHASRNWSPQFAGAAQFEVSNGTDMYSVDLERCTCTCYRWELTGIPCVHVIPCIHFMRRSPEDFVHWCYHRETYMVMYSHFLRPLNGPIEWLPVTNLDPIIPPPFKRLPGRPRVSRIRDVDEAPSRTVLSRRHLNVTCGWCGSVGHNARTCEGGGQSSAGAGRGNRGRGRGGRGRSEDTFMGFRVPETAPVTITSLVPETIPSRVSETVPDRVHETQESDAEGPPTQTYTNVDLNLP 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2094843 2112455 + BLOR08703 Blo18g00215 73519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00215 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Blo18g00215 960 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 470 - -
Blo18g00215 960 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 57 470 - -
Blo18g00215 960 ProSiteProfiles ACT domain profile. 236 310 IPR002912 -
Blo18g00215 960 ProSiteProfiles Protein kinase domain profile. 337 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00215 960 SMART 26again6 756 783 IPR006564 GO:0008270
Blo18g00215 960 Pfam SWIM zinc finger 751 774 IPR007527 GO:0008270
Blo18g00215 960 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 518 596 - -
Blo18g00215 960 SUPERFAMILY Protein kinase-like (PK-like) 328 602 IPR011009 -
Blo18g00215 960 ProSiteProfiles Zinc finger SWIM-type profile. 749 781 IPR007527 GO:0008270
Blo18g00215 960 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 518 596 - -
Blo18g00215 960 MobiDBLite consensus disorder prediction 943 960 - -
Blo18g00215 960 CDD STKc_MAP3K-like 343 596 - -
Blo18g00215 960 MobiDBLite consensus disorder prediction 875 960 - -
Blo18g00215 960 SUPERFAMILY ACT-like 235 290 IPR045865 -
Blo18g00215 960 MobiDBLite consensus disorder prediction 161 186 - -
Blo18g00215 960 Gene3D Phosphorylase Kinase; domain 1 327 414 - -
Blo18g00215 960 Gene3D Transferase(Phosphotransferase) domain 1 416 683 - -
Blo18g00215 960 SMART serkin_6 337 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00215 960 Pfam Protein tyrosine and serine/threonine kinase 337 593 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00215 - - - vvi:100246204 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00669 Blo-Chr2:17946477 Blo18g00215 Blo-Chr18:2094843 4.77E-127 dispersed
Blo02g00973 Blo-Chr2:37711807 Blo18g00215 Blo-Chr18:2094843 4.64E-118 dispersed
Blo02g00994 Blo-Chr2:38556515 Blo18g00215 Blo-Chr18:2094843 1.33E-109 dispersed
Blo03g01375 Blo-Chr3:40192971 Blo18g00215 Blo-Chr18:2094843 1.27E-132 dispersed
Blo16g00098 Blo-Chr16:2364835 Blo18g00215 Blo-Chr18:2094843 4.89E-132 dispersed
Blo17g00370 Blo-Chr17:4098600 Blo18g00215 Blo-Chr18:2094843 0 dispersed
Blo18g00215 Blo-Chr18:2094843 Blo05g00712 Blo-Chr5:24700417 3.71E-154 dispersed
Blo18g00215 Blo-Chr18:2094843 Blo01g01614 Blo-Chr1:56034216 1.04E-140 transposed
Blo18g00215 Blo-Chr18:2094843 Blo13g00492 Blo-Chr13:26099919 7.94E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84816 PF07714 PK_Tyr_Ser-Thr 1.10E-52 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00215 Blo_Chr18 FPKM 4.717968 3.51385 5.077456 5.224386 3.167722 2.983898 3.27311 8.162908 8.400946 10.150881