Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00216 ATGGCAGGTCCCGTTAGCTACAGAAATGCTGACCGTGAAATCAAGCAGGCTTTAGTAGCTTTGAAGAAAGGTGCTCAATTGCTTAAATATGGCCGTAAAGGAAAGCCTAAATTCTGTCCATTTAGACTCTCTAGTGATGAATCGTCTTTGATCTGGATATCAAGTAGTGGTGAAAGAAGCTTGAAGCTAGCTTCCATCTCTAGAATTATTCCCGGACAAAGAACTCCTGTCTTTGAACGATATTTGCATCCTGAAAAAGATTATTTATCATTTTCTCTTATATACAACGGTGGAAAGAATTCTCTTGATCTGATTTGCAAAGATAAAGTTGAGGCTGAGGTCTGGATTGCAGGCCTTAAAGCGTTAATAGCATCTGGTCAAGGTGGTCGATCCAAAATTGATGGATGGAATGATGGTGCCTTCTATCTCGATGATGGCAGTGATTTGACTTCAAATAGTGAGAGTGACAGCTCCAATTGTGCAACAAGAGATCCTAGCTCATCTGAGGTTTCTGCTGATCTTAACCATAATATATCTCCAAAGAGATTCAGGCCTGAGAATTCTGGACAATCACAAAGATTAAATGTAGCATCAAACCACCCCAATATGCAAGTAAAAGGATATGGTTTGGATACTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACCTCAAGTCATGGTTCTGCCCCAGATGATTATGATGCTCTAGGTGATGTTTACATATGGGGTGAGGTTATCAGTGATAATGTGGTCAAGGTTGGGGCTGATAAAAATACTAATTATGTGACCTTAAGAGCAGATGTGCTTCTTCCCAAGCCATTAGAGTCCAATGTAGTATTGGATATTCACCATATAGCCTGTGGGGTCAGGCATTCTGCTCTAGTCACAAGGCAAGGTGAAGTTTTTACATGGGGTGAGGAATCTGGTGGAAGGCTTGGCCATGGCGTGAGAAAGAATATCATTCGGCCTTGTATTGTTGAATCATTAGCGGCCACTAGTGTCGATTTTGTTGCTTGTGGAGAGTTCCATACTTGTGCTGTTACAATGGCTGGCGAACTTTATACCTGGGGAGATGGCACACATTATGCAGGGCTTCTTGGCCATGGCAGTGATGTCAGTCATTGGATACCAAAGAGGGTTTCAGGTGCTCTTGAAGGACTGCAAATTGCTTCAGTGACATGTGGGCCTTGGCATACAGCCTTGATAACGTCAATGGGTCAGCTCTTTACTTTTGGTGATGGAACATTTGGTGTATTAGGTCATGGAGATAGAGAAAATGTTTCATATCCTAGAGAAGTGGAATCTTTATCAGGCTTAAGAACAATTGCTGTTGCATGCGGGGTGTGGCATACTGCTGCCATAGTCGAAGTTATTGTGACACAATCCAGTTCTAGTGTTTCTTCAGCGAAGTTATTTACTTGGGGTGACGGCGATAAGAATCGGTTGGGGCATGGAGACAAAGATCCCCGGCTTAAACCAACGTGTGTGCCAGCATTAATCGACTACAATTTCCACAAAATTGCTTGTGGCTACAGTTTAACTGTTGGCTTAACCACATCAGGACAAGTTTTGACTATGGGAAGCCCTGTTTATGGTCAGCTTGGGAATCCTTGTGCTGATGGGAAGTTGCCATGCTTGGTAGAGGATAAGCTTGTGGGAGAATCCATTGAAGAAGTTGCATGTGGTGCCTATCATGTTGCGGTACTAACTCGTAGAAATGAAGTTTATACGTGGGGTAAGGGTGCAAATGGAAGACTGGGTCATGGAGATGTTGAAGATCGAAAACTGCCAACTTTGGTTGAAGGTTTGAAAGAAAGACATGTCAAATATATTTCTTGTGGTTCTAACTATATGGCAGCCATTTGTCTTCATAAATGGGTTTCAGGTGCTGAGCAGTCACAGTGTTCTGCTTGTAGACAGGCCTTCGGATTTACACGAAAAAGGCACAACTGCTATAATTGTGGACTTGTGCACTGCCACTCATGCAGTTCCAAAAAAGCATTACGAGCTGCACTGGCTCCTAGTCCTGCCAAAGGATACCGCGTATGCGATTCTTGTTATACAAAATTGAACAAGGTATCTGAAGCTGGTAATAATGACAGGAGAAATGCAATACCTCGCCTTTCTGGTGTGAACAAGGATAGATTAGACAAGAGAGAGCCTAAAGTGTCTGATTCTATGCCTTCTAATATGGATTTAATAAAGCAGTTAGATAGCAAAGCAGCCAAACAAGGAAGGAAGGCAGCAGATACATTCTCCCTTGTTCGCTCCTCTCAAGCACCGTCATTGGTGCAGCTTAAAGATGTTTCAGCCATTACTGTTGATTTACAGCGAACAGCTCCCAAGCAGGTGCTTATGGCTTATGGAGTGAATTCTAGGTCTGTGTCACCTCTCTCAAAGAGAAGTCTTCCTCGATCGGCTACTCCTGTTCCTACAGCATCAGGACTTTCTTTCTCCCAAAGTGTTTCTGAGAGCTTGAAGAGAACAAATGAGCTTTTGAATCGCGAAGTGTCAACTTTACGTGCACAGGTTGAAAGCTTGAGACAAAGATATGAACTCCAGGAACTAGAGTTTCAAAGATCAATGAAGAATACACAAGAAGCACTGACCTTAGCTGCAGATGAATCTGCTAAATCTAAAGCTGCGAAAGAAGTCATTAAAACGCTAACTGCTCAGCTCAAAGATATGGCTGAGAGGTTACCTGGTGGAGTTTATGAAACCGAGAATGCAATACCAGCATATCCTCCCAATGGTTCAGAGCCATATGGCATTCACTATTTGGACACAAATGGAAAGCGCTATTCCAGATCAGATTCCATCAGCAGCTTCTCGTTGGCATCTCCCTCAGCCATAGACTCTGCCACATGGGGAGGAAGTCAAGGCATGGCTAATTCACCCCGAGAACTTCCTCAAACCAGTGAAATTAATCTTGAACAAGAGCAAAAGTTGCTGCTGCCCAATAGGATTGAGGGTCACCAAGATTGTAGATTGCATGACAGTGGAAAAGTTCGAGCAAGTTTACCTGAGAAACTTGAAGGACAATCTGAACCCTCCCGTTACAATGAGACTACTGATAGATCCGGGAATTCTACATTGGCTACTAATGGTAATCCAGTTGAGGCAGAATGGATTGAACAATTTGAACCTGGTGTATATATCACTCTGGTTGCTTTGCAAGATGGAGTTAGAGATCTTCAACGAGTGCGCTTCAGCCGAAGACGATTTGAAGAGCGACAAGCAGAGAATTGGTGGGCCGACAACAGGGAGAAGGTGTACAAGAAATACAATGTTTGTGGAACCCAGCAGTCTTCAATTTCGAGTCAAGCAGAACGGAGATCAGAGGGAGAGGAAACTGCCTTTGGCCTTTGGTCAAACCCAAAGACCAACCTCCAATTTGGGTTCTTGACTTCACCTACTTCGGCACTGGAATGCGATGCCCAAGAAAATAGATTATCACAAGCAAAAACAGACGAGAAATACAGTGCCATCATGGGGTTGTCAATGGTTTCCACTCTTGCCACCATTTTCGTAGCAGTCCTCTTACTAAACTTTCCGGCCAAAACCACGGCAAAATACTACTACAGGTCACCTCCACCGCCGGCTTTTCCTTTGCCCGAGACTCAGATGTCCAAATCTTCCGATCAACAATCGTTAAATAAAGCTACATCACCTCCACCGCTAGCATTTCCCTTAGAAAACCGAAAGTTATTATCGTCGTCGCCGCCACGTCCTGAGACTCAGATGTCCAAATCTTCCGATCCGGAATCTAGAATACTACTACAGATCACCTCCACCGCTGGCTTTTCCCTTGGAAAACCAAAAGTTATTATCGTTGCCGCCACGCCCCAAGACTCAGATGTTCAAATCTTCCGATCCAATATCGTTAATGAGAGCTTCGTATTACTACCCATCGCCTCCACCTCCGCCACCGCCTCCGCCTCCGCCTCCGCCGCCGCCGCTGCTGCTGCCACCAGGAAAATGACAACTGTAGCGTGGTGCATTGCCTTTGTGTCGATCAAGCTACTTGAATTGGATTTAGGTTGA 4044 44.29 MAGPVSYRNADREIKQALVALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSSGERSLKLASISRIIPGQRTPVFERYLHPEKDYLSFSLIYNGGKNSLDLICKDKVEAEVWIAGLKALIASGQGGRSKIDGWNDGAFYLDDGSDLTSNSESDSSNCATRDPSSSEVSADLNHNISPKRFRPENSGQSQRLNVASNHPNMQVKGYGLDTFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISDNVVKVGADKNTNYVTLRADVLLPKPLESNVVLDIHHIACGVRHSALVTRQGEVFTWGEESGGRLGHGVRKNIIRPCIVESLAATSVDFVACGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAIVEVIVTQSSSSVSSAKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACGYSLTVGLTTSGQVLTMGSPVYGQLGNPCADGKLPCLVEDKLVGESIEEVACGAYHVAVLTRRNEVYTWGKGANGRLGHGDVEDRKLPTLVEGLKERHVKYISCGSNYMAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPSPAKGYRVCDSCYTKLNKVSEAGNNDRRNAIPRLSGVNKDRLDKREPKVSDSMPSNMDLIKQLDSKAAKQGRKAADTFSLVRSSQAPSLVQLKDVSAITVDLQRTAPKQVLMAYGVNSRSVSPLSKRSLPRSATPVPTASGLSFSQSVSESLKRTNELLNREVSTLRAQVESLRQRYELQELEFQRSMKNTQEALTLAADESAKSKAAKEVIKTLTAQLKDMAERLPGGVYETENAIPAYPPNGSEPYGIHYLDTNGKRYSRSDSISSFSLASPSAIDSATWGGSQGMANSPRELPQTSEINLEQEQKLLLPNRIEGHQDCRLHDSGKVRASLPEKLEGQSEPSRYNETTDRSGNSTLATNGNPVEAEWIEQFEPGVYITLVALQDGVRDLQRVRFSRRRFEERQAENWWADNREKVYKKYNVCGTQQSSISSQAERRSEGEETAFGLWSNPKTNLQFGFLTSPTSALECDAQENRLSQAKTDEKYSAIMGLSMVSTLATIFVAVLLLNFPAKTTAKYYYRSPPPPAFPLPETQMSKSSDQQSLNKATSPPPLAFPLENRKLLSSSPPRPETQMSKSSDPESRILLQITSTAGFSLGKPKVIIVAATPQDSDVQIFRSNIVNESFVLLPIASTSATASASASAAAAAAATRKMTTVAWCIAFVSIKLLELDLG 1347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2122330 2142763 - BLOR08704 Blo18g00216 73520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00216 1347 MobiDBLite consensus disorder prediction 795 820 - -
Blo18g00216 1347 Coils Coil 823 857 - -
Blo18g00216 1347 Gene3D - 462 630 IPR009091 -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 999 1035 - -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 298 IPR000408 -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 1017 1035 - -
Blo18g00216 1347 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Blo18g00216 1347 SUPERFAMILY PH domain-like 14 123 - -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Blo18g00216 1347 CDD PH_PLC_plant-like 12 124 - -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Blo18g00216 1347 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Blo18g00216 1347 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1103 - -
Blo18g00216 1347 Gene3D - 13 129 IPR011993 -
Blo18g00216 1347 Gene3D - 186 461 IPR009091 -
Blo18g00216 1347 SUPERFAMILY FYVE/PHD zinc finger 625 695 IPR011011 -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 698 729 - -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 1203 1254 - -
Blo18g00216 1347 Pfam Transcription factor BRX N-terminal domain 874 909 IPR027988 -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 351 402 IPR000408 -
Blo18g00216 1347 Pfam Regulator of chromosome condensation (RCC1) repeat 471 515 IPR000408 -
Blo18g00216 1347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 701 IPR013083 -
Blo18g00216 1347 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Blo18g00216 1347 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Blo18g00216 1347 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Blo18g00216 1347 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Blo18g00216 1347 Coils Coil 879 899 - -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 1239 1254 - -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 707 725 - -
Blo18g00216 1347 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1103 - -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 1206 1223 - -
Blo18g00216 1347 MobiDBLite consensus disorder prediction 149 194 - -
Blo18g00216 1347 ProSiteProfiles BRX domain profile. 1041 1096 IPR013591 -
Blo18g00216 1347 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Blo18g00216 1347 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Blo18g00216 1347 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Blo18g00216 1347 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1095 IPR013591 -
Blo18g00216 1347 SMART fyve_4 623 692 IPR000306 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00216 - - - tcc:18592573 1623.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01332 Blo18g00216 CCT
Blo12g01105 Blo18g00216 CCT
Blo17g00217 Blo18g00216 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01332 Blo-Chr1:50868512 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo03g00778 Blo-Chr3:32448139 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo12g01105 Blo-Chr12:28741846 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo16g01121 Blo-Chr16:39702350 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo18g00216 Blo-Chr18:2122330 Blo18g00489 Blo-Chr18:5921309 0 dispersed
Blo17g00217 Blo-Chr17:2230136 Blo18g00216 Blo-Chr18:2122330 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00216 Blo_Chr18 FPKM 21.938673 24.125973 14.782666 14.724663 22.884483 20.462889 21.948883 12.545374 12.682179 13.408008