Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00219 ATGGATTCGTCGGAGTTTCCCTCTGGAAGATCTCCCAGAAAAGAGCTTCAAGGAACTAGACCAACCCCTCTCAGAATTAACAAAGAATCTCACAAGATCTATAAGAAGCCTCCACTAGCGCCTCAGCCGCCACTACAGCAAGCTCAGATTCGTCCTCCTGTTATAATCTACACAGTTTCTCCCAAGATTATCCACACGAACCCTAGCGACTTCATGGACTTAGTCCAGCGTCTTACAGGCCTAGAATCATCTTCTTCATCATCATCATCATCTTCTTCTTCTGCTTTGAGCTTTGGAGCGTCGTTTCCCAGAGCTATTCCCATGGCGGACATTAATAACAGTGGGGCAATGTCACCGGCTGCTCGTTATGCTACAATAGAGAGAGCCGCTAGGGCAAACCCTGAGTGGAAGAAGATCGATCACGGTACTGGTAGTAGCCTTCAAAGAGACGTGAATTTAATTGAAGATATAGAATTGGGGGGTGGAGTCGAGCGGACCACTTGTTTCCCCGGAATCTTGTCGCCGGGGCCGAAGTCTCTGTCACCGTTTCCGACTAGCTTTTTTTCTCCGATAACACCCGATCCGAACTCGCTGAGTTTCTTCCATGATTTGAGTCCCATCCTCCATGGGAATAGAAACTTCATTGAAGGCAATCCTTTCATGCCAAGCCCTTCGAACGTTGTTTCGCCTCCTCATCCACCCATAGACCTGTTCAACAATTTCTCCGGTCTCTAA 735 47.89 MDSSEFPSGRSPRKELQGTRPTPLRINKESHKIYKKPPLAPQPPLQQAQIRPPVIIYTVSPKIIHTNPSDFMDLVQRLTGLESSSSSSSSSSSSALSFGASFPRAIPMADINNSGAMSPAARYATIERAARANPEWKKIDHGTGSSLQRDVNLIEDIELGGGVERTTCFPGILSPGPKSLSPFPTSFFSPITPDPNSLSFFHDLSPILHGNRNFIEGNPFMPSPSNVVSPPHPPIDLFNNFSGL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2150628 2151362 - BLOR08707 Blo18g00219 73523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00219 244 PANTHER F16F4.1 PROTEIN-RELATED 1 241 IPR039607 -
Blo18g00219 244 MobiDBLite consensus disorder prediction 1 47 - -
Blo18g00219 244 Pfam VQ motif 58 83 IPR008889 -
Blo18g00219 244 PANTHER F16F4.1 PROTEIN 1 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00219 K20725 MKS1; MAP kinase substrate 1 - gra:105788333 207.223
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00219 Blo18g00219 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00824 Blo-Chr4:8690431 Blo18g00219 Blo-Chr18:2150628 5.83E-11 dispersed
Blo16g00524 Blo-Chr16:21467727 Blo18g00219 Blo-Chr18:2150628 1.18E-22 dispersed
Blo17g00219 Blo-Chr17:2248200 Blo18g00219 Blo-Chr18:2150628 2.14E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00219 Blo18g00219 . Bda13g01527 Bpe02g01602 Bpe14g00334 Bma01g00868 Bma02g00277 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006596 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 0 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00219 Blo_Chr18 FPKM 3.758144 4.016297 0.761978 0.559784 9.972483 9.148266 12.264151 0.774591 0.622059 0.376181