Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00226 ATGGTCAAAGAAACTGAGTTCTATGATATTCTTGGTGTTCTTTCATCGTCGTCTGAAGACGAAATTCGCAAGGCTTATTACCTTAAGGCAAGACAAGTTCATCCGGATAAGAATCCAAACGACCCGAAGGCTGCTGAAAAATTTCAGGTACTCGGGGAAGCTTATCAAGTTTTGAGCGACCCTGTTCAAAGAGACTCGTATGATCGAAATGGAAAACACTGCATCTCTAGGGAAGCCATGCTTGATCCAACTGCTGTCTTTGCACTTTTATTTGGAAGTGAATTATTCGAGGATTATATTGGACATTTAGCTGTCGCATCAATGGCTTCTTCTGAGTTATCCAGTGAACATGAACATTTAGAGAAGCTAAATGATAAGCTGAAGGCAAGTGCTGTCCAAAGAGAGAGGGAAGAGAAACTAGCAAGATTCCTGAAGGGTTTTCTTACTCAATATGTTCAAGGTGACAAAGAAGGGTTCTTACGCCGGGCTGTATCTGAAGCAAGACGACTTTCAAACACAACTTTTGGAGTTGACATACTAAACACGGTTGGCCATGTATATTCGAGACAGGCAGCTCAAGAGCTTGGAAGGAAAGCCATTTATCTTGGGGTGCCCTTTTTGGCGGAATGGGTTCGAAACAAGGGCCATTTTTGGAAGTCGCAGATTACAGCAGCGAAAGGCATGAGATTTATAATATCTTCCAAATTTGGAAATGAGAATTCATTGGTTTGGCGTCTAACCATGCCAGGTGCTTTTCAGCTGCTACAACTTCAAGAAGACATGCGTAAGCAGTTGAAAATGGATAAAAATGTGCCTGAAAACAGTGTTGAATCACACATACGCCTGAATAAAGACACATTGATGAACTCACTGTGGAAGTTAAATGTAGTGGACATAGAAATAACCCTTATACACGTGTGTCAAATGGTGCTGAGGGATAGCTCTGCGAGAAAAGAAGAGCTTAAAGCTCGCAGCTTGGCTCTGAAAATTCTTGGGAAAATCTTTCAGTTTTCTGACGATGATTCACAAGAATTTGTTGTGTTTCAGCAGGATAAACTTGGAAAAAATGGTGAAACGTCGAGACGAAGAGGCATTGAAGAAGATGATGAAACCAGTTCTGATAGCAGCGATGAAGAGGAGTCACACAGAACGCTGCCATATCGAACGCCTTTTCTCACACAGGGTATTGGCAGACTCTTCAAATGCCTCTGCAACCCTGCATTTGATGTAGACGATGATGAAATTGCATACAGAAGCAAATGA 1263 41.88 MVKETEFYDILGVLSSSSEDEIRKAYYLKARQVHPDKNPNDPKAAEKFQVLGEAYQVLSDPVQRDSYDRNGKHCISREAMLDPTAVFALLFGSELFEDYIGHLAVASMASSELSSEHEHLEKLNDKLKASAVQREREEKLARFLKGFLTQYVQGDKEGFLRRAVSEARRLSNTTFGVDILNTVGHVYSRQAAQELGRKAIYLGVPFLAEWVRNKGHFWKSQITAAKGMRFIISSKFGNENSLVWRLTMPGAFQLLQLQEDMRKQLKMDKNVPENSVESHIRLNKDTLMNSLWKLNVVDIEITLIHVCQMVLRDSSARKEELKARSLALKILGKIFQFSDDDSQEFVVFQQDKLGKNGETSRRRGIEEDDETSSDSSDEEESHRTLPYRTPFLTQGIGRLFKCLCNPAFDVDDDEIAYRSK 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2226215 2229983 + BLOR08714 Blo18g00226 73530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00226 420 CDD DnaJ 6 60 IPR001623 -
Blo18g00226 420 Coils Coil 110 140 - -
Blo18g00226 420 PRINTS DnaJ domain signature 26 41 IPR001623 -
Blo18g00226 420 PRINTS DnaJ domain signature 43 63 IPR001623 -
Blo18g00226 420 PRINTS DnaJ domain signature 8 26 IPR001623 -
Blo18g00226 420 PRINTS DnaJ domain signature 63 82 IPR001623 -
Blo18g00226 420 Pfam DnaJ domain 6 68 IPR001623 -
Blo18g00226 420 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 404 - -
Blo18g00226 420 MobiDBLite consensus disorder prediction 357 384 - -
Blo18g00226 420 SMART dnaj_3 5 63 IPR001623 -
Blo18g00226 420 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Blo18g00226 420 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 404 - -
Blo18g00226 420 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Blo18g00226 420 Pfam X-domain of DnaJ-containing 133 339 IPR026894 -
Blo18g00226 420 Gene3D DnaJ domain 1 84 IPR036869 -
Blo18g00226 420 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00226 - - - zju:107423466 565.074
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00834 Blo18g00226 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01664 Blo-Chr1:56388186 Blo18g00226 Blo-Chr18:2226215 1.19E-134 dispersed
Blo02g00811 Blo-Chr2:28410261 Blo18g00226 Blo-Chr18:2226215 9.53E-113 dispersed
Blo18g00226 Blo-Chr18:2226215 Blo05g00194 Blo-Chr5:1942106 1.12E-13 dispersed
Blo18g00226 Blo-Chr18:2226215 Blo12g00834 Blo-Chr12:26640297 2.14E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00226 Blo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.571994 0.573508 0.0 0.0 0.0 0.357356