Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00229 ATGGACTTGAGCGTCATTCCGTTTAATCAGACACTCAAGCCGGAGAACGAACTCGACGAAGACGGCGACATCGTCGAGCCTAGGCACCCTTGCGAGCCCGCTGTGGTGATGAACCCCAGGAAGAAATTGACGTCTCAGTTGAGTTTCAGGTACGGAGAGTGCATGCGGAACCACGCGGCGTCCATTGGCGGACACGCAAGTGATGGTTGTGGCGAGTTCATGCCTCGTAGTGGTGACTCGCTCACTTGTGCTGCTTGTGGATGTCACCGCAACTTTCATCGGAGAGAATTTCCTGGTGGTGACCAGCTGCAGCATCACTATCCAGTGCACTCTCCCCATCCGTTGTTGCTGTACGCCGCCGGCCACGCAAAGAGCCCAATTATCGGGAACCACGTCGGCCTGTCTCAGCATTTTCGTAACGGAGGCGGGCGGCCAATGGGAAGCGGCGATCTGAGAGATCAGTACCAAGAGATGAACGACTACGACCGAAGGTCGGAGACACCGGACGAGAGAGGGGAAGTGCATATGGGATCCACGCCGAGAGGGAAGAGATTCAGGACCAAGTTCACGCAGGAGCAGAAAGACAGAATGCTGGCGTTCGCAGAGAGCATCGGGTGGAGGATGCAGAGGAGCGACGACGTGGCGCTTAACCAGTTCTGCGCAGACGTTGGGGTGAAGCGCAACGTCCTCAAAGTCTGGATGCACAATAATAAAAGCGCCCATAGCCGTCGAGAACCACAACCCACGACACAAAGCCAGTCTCCGTCGCCACCTCATCCTCCTCCACCGGTGGAGCTCATTGGAGCTTAA 810 56.54 MDLSVIPFNQTLKPENELDEDGDIVEPRHPCEPAVVMNPRKKLTSQLSFRYGECMRNHAASIGGHASDGCGEFMPRSGDSLTCAACGCHRNFHRREFPGGDQLQHHYPVHSPHPLLLYAAGHAKSPIIGNHVGLSQHFRNGGGRPMGSGDLRDQYQEMNDYDRRSETPDERGEVHMGSTPRGKRFRTKFTQEQKDRMLAFAESIGWRMQRSDDVALNQFCADVGVKRNVLKVWMHNNKSAHSRREPQPTTQSQSPSPPHPPPPVELIGA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2257098 2257907 - BLOR08717 Blo18g00229 73533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00229 269 MobiDBLite consensus disorder prediction 237 269 - -
Blo18g00229 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 6 39 248 - -
Blo18g00229 269 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 96 IPR006456 -
Blo18g00229 269 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 50 96 IPR006456 -
Blo18g00229 269 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 238 IPR006455 -
Blo18g00229 269 MobiDBLite consensus disorder prediction 160 181 - -
Blo18g00229 269 Pfam ZF-HD protein dimerisation region 49 96 IPR006456 -
Blo18g00229 269 MobiDBLite consensus disorder prediction 251 269 - -
Blo18g00229 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 248 - -
Blo18g00229 269 Gene3D - 168 243 - -
Blo18g00229 269 SUPERFAMILY Homeodomain-like 173 243 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00229 - - - zju:107405038 266.929
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01603 Blo18g00229 CCT
Blo12g01115 Blo18g00229 CCT
Blo01g01603 Blo18g00229 ECH
Blo12g01115 Blo18g00229 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00796 Blo-Chr17:25617141 Blo18g00229 Blo-Chr18:2257098 1.19E-43 dispersed
Blo18g00229 Blo-Chr18:2257098 Blo18g00811 Blo-Chr18:23935729 1.38E-45 dispersed
Blo17g00244 Blo-Chr17:2439156 Blo18g00229 Blo-Chr18:2257098 2.33E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1130 Blo01g01603 Blo12g01115 Bda01g00478 . . . . . Cmo05g00314 Cmo12g00355 Cma01g01018 . Car01g00899 Car12g00381 Sed11g1094 . Cpe07g00360 Bhi04g00141 Tan02g2081 Cmetu03g1137 . Hepe10g0160 . Lcy13g1907 Cla08g01417 Cam08g1895 Cec08g1473 Cco08g1606 Clacu08g1588 . Cre08g1372 Cone4ag1978 . Cone17ag1410 Cone20ag0072 . . Chy04g00409 Cme03g00439 . Blo18g00229 . Bda13g01547 . . . Bma02g00291 . Cmo01g01060 . Cma12g00404 Cma05g00312 Car05g00808 Car09g00086 Cpe11g00260 Cpe02g00066 . . . . . . . . . . . . . . Lsi08g00283 Csa02g02140 Chy03g01379 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016653 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13576 PF04770 ZF-HD_dimer 3.90E-25 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00229 Blo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0