Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00244 ATGATTGCTTTGGTTGAAGAGGAAGAATCTATCAAGGATATGCAGGAAACAAGTTTTGTTGAGAAATTGGCCAAGTTGCTGATGTTAAGCTTGAATAAGAGACTGAATGAGATAAGGCGGAATTTTGGTTTTCCTGATGATTACTTAATTAGAATTGTCCCTAAATATCAGGATTTGTTTCGAATTGTCAATTCCAATGGGAGGAAAAATTCAATGGAGATTGAATTATTATCTTGGAATTCAGATCTAGCAGTTTCTGCTCTAGAATCCTCAGCTCATAAACGAGGTGAGGAGCCAAGTTTTTCGTGCTGTCTGCCTTCAACTTGGGTTAAATCTTGGGAAAATTTTCATGAATTCAATGCAACTCCATACATTTCACCATACATGAACCCCAAAGGTTTGGTCGAAGGATCAAAGGAAATGGAGAAAAGGACAGTAGGATTGATTCACGAGCTCTTATCACTAACTCTATGGAAGAAAGCATCAATCATGAAGCTAAGTCATTTCAAGAGAGAGTTTGGATTGGCAGCAAAACTAAACATTTTACTTCTTAAGCACCCTGGTATATTTTATGTTTCAAATAAAAATCAGATCTACTCAGTTCTTCTTAGGGAAAGGTATAATGGATCAGAACTGATTGTCAAAGATCCACTCGTTATTGTGAAGGAGAAATTTGGAGAATTGATGCAGGAGGGTCTTCATGAATATAATAGGAGGCACTATCTGATGAATCTAGAAACGAGTAAAAAGAAAGGTGGGCTTTTTGGGGGACCAGAAAAAGCCAGAGGCAGAGATTCTAAAATGGATGAGAGTAACTATCAACAAGACAAGGGAGATGGAAACAAGACCGGTTACTTGTTGCAAAAGCTATGGCAGAGAAGGAGAGTCAGAGACTTGTTCTGGTCTGGCAAGCATAAGTTCTTCTATAATGGCCAAGAATATGTTGATGCAGTTGCTAGTGACATGCTTTCTCTTGATAACGGAATCAAAGTTGACAGTCACAAATTCAACGAATCATCTTTTACAGGTACTCCAACTCTTACTATCCTCCTATTGCACCAGGCCCTAGGAAATGAGGTGGAGTCTCCCGGCCATACGAAGTAG 1104 38.86 MIALVEEEESIKDMQETSFVEKLAKLLMLSLNKRLNEIRRNFGFPDDYLIRIVPKYQDLFRIVNSNGRKNSMEIELLSWNSDLAVSALESSAHKRGEEPSFSCCLPSTWVKSWENFHEFNATPYISPYMNPKGLVEGSKEMEKRTVGLIHELLSLTLWKKASIMKLSHFKREFGLAAKLNILLLKHPGIFYVSNKNQIYSVLLRERYNGSELIVKDPLVIVKEKFGELMQEGLHEYNRRHYLMNLETSKKKGGLFGGPEKARGRDSKMDESNYQQDKGDGNKTGYLLQKLWQRRRVRDLFWSGKHKFFYNGQEYVDAVASDMLSLDNGIKVDSHKFNESSFTGTPTLTILLLHQALGNEVESPGHTK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2461573 2463428 - BLOR08732 Blo18g00244 73548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00244 367 MobiDBLite consensus disorder prediction 254 278 - -
Blo18g00244 367 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 278 IPR045040 GO:0003723
Blo18g00244 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 1 278 - -
Blo18g00244 367 Pfam Plant organelle RNA recognition domain 2 232 IPR021099 GO:0003723
Blo18g00244 367 MobiDBLite consensus disorder prediction 254 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00244 - - - zju:107435127 418.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01434 Blo18g00244 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01434 Blo-Chr1:53196747 Blo18g00244 Blo-Chr18:2461573 1.00E-27 dispersed
Blo06g00460 Blo-Chr6:25799503 Blo18g00244 Blo-Chr18:2461573 2.24E-47 dispersed
Blo12g00707 Blo-Chr12:25360841 Blo18g00244 Blo-Chr18:2461573 5.92E-27 dispersed
Blo18g00244 Blo-Chr18:2461573 Blo07g01285 Blo-Chr7:33063512 1.88E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g183 Blo01g01434 . Bda01g00646 . . Bpe02g00517 . Bma01g02187 . . . . Car09g00491 . . . Cpe06g00269 . . . . . . . . . . . . . . . . . . . . Chy04g00252 . . Blo18g00244 . . . . Bma01g00900 . . . Cmo09g00550 Cma09g00559 . . . . . . . . . . . . . . . . . . . . . . Cme04g00282
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005099 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00244 Blo_Chr18 FPKM 13.020447 14.263148 13.743226 13.78994 13.784767 14.638549 15.26343 13.60756 12.204827 12.633599