Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00248 ATGAATCCTTTTGTTTGTTGGGGGGTTTTGGTCGTTTTTCTTTCTGGGTTTTTGTCGGCAGAGTCGCAGAACGCGACGACGCTGGTGAATGTGGGGTTGGTACTTGATTTAGATGAAGAAGTTGGGAAGATGGCGCTGAGCTGTATCGATATTGCTCTCTCCGACTTCTATTCCTCCCACAGTGGTTACAAGACCAGGCTCGTACTTAATACCAGAGACTCCATGGAAGACGTTGTTGAAGTTGCAGCTGCAGGCCTAGACCTTATTAAAAATACAAAAGTGGAAGCTATAATCAGACCGGTGAGTTCGATGCATGCTACCTTCTTAATTGAACTCGGAACTAAAGTTCAGGTCCCCATTATTTCATTTTCAGTCACGAGCCCCATGCTAACATCTCTTCAGAGCTCGTATTTTTTTTGCATCGCGCAAAACGACTCGACTCAAATTCAAGCCATTTGTTCAATTATCCAAAATTTTGGGTGGAGAGAAGTAGTGCCAATTTACGTAGAAAATGAGTTCGGGCAGGGAATTATCCCCTACTTAGCCGATGCATTACAAGGCATTGACATTCACATGCCTTATAGAAGTACTATTCCTTCGTCACCCACAAATGATCAAATCGCAGCGGAGCTGCACAAGCTGATGACCATGCAGACTAGAGTTTTTGTTATCCATCTCCCACCTAGTCTGGCTTCGACCATTTTTAAAATTGCCAAAGATATTGGGATGATGAGCCAAGGCTATGTTTGGATCATGACCAATTCGATCGCTGATCTTTTGACTCAAATAGATGAATTGGTTTTCGATTCGATGCAAGGGGTGCTGGGCGTGAGGACTCATGTTCCGAGATCGGACAAGCTAGTTGATTTCAAAGTGAGATGGAAAAGGAAGTTTCGGCAGGATAATCCGACCGATCTTGATGCTCAACTGAATGTTTTTGGACTGTGGAGTTATGATGCGGCTTGGGCATTAGCCATGGCTGTCGAGGCAGCTCTTTCGACATCAAATCTTGGCTATCAAAAAGCCAATAGCACAACCAATAGAACTGATCTCGACACTTTTGGGGTTTCTCTAAACGGCCCTAGAATTCGCGACGAGCTGTCCAACACGGTATTTACAGGACTGAGCGGGAATTTTAGCCTGTTCGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTCTTACAGGGAGAACCATTGGATATTGGACGCCCAAAACTGGTGTCTCAAGAACTTTGAGTTCATCTCCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAACGCCAAAGGGATGGGAGATTCCAACAAATGGGAAGAAACTGAGAGTAGGAGTTCCTTACAATAATGTCTCATTCGGCGGATTTGTGAAAATAACAAATGATTCCATCTCAAATGCCACAATTGTCACAGGCTACTGCATAGACATCTTCAATGCAGTTATTAAGAAGCTGCCTTACGCCATTGTTCCAGACTTCATTCCCTATAAAACCAGCCCTAATTTTACATACGATGAAATGATCTACCAAGTCAAACTCGGGAACTTCGACGCAGTAGTGGGGGATGTGACGATCACTTGGAGTAGATCTCGGTTCGTAGATTTTACGTTACCATTCACAGAATCAGGGGTGATAATGGTGGTGCCCCTGACAGACACCTCGAAGAAGAACGCATGGGTGTTCTTGCGGCCTCTGTCGTTGGATCTTTGGATGACAAGTGGTTGTTTCTTCATCTTCATCGGCTTCGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCAGGGGGCCCTGGACTCATCAGCTGGGCACTAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCGCACAGGGAGAGAGTGGTTAGCAATTTCGCTAGATGCGTGGTGGTGATATGGTTCTTCGTCGTGCTTATTCTGACCCAGAGCTACACTGCCAGTTTAACCTCGCTTCTCGTCCAACAGCAACAACCTACTGTAAATGATGTGGATCAGCTTTTGAAGAACAAGGAAAGAGTCGGCTACCAAGGTGGTTCTTTTGTCCTGGGAATTCTGATTTCCTTAAAATTTGAACCTGACAAGCTTGTAACCTATGGTAGTCCAGAAGAATTAGATGACCTACTCTCCAAAGGAAGCGCTAATGGCGGCATTGCAGCAGCGTTTGACGAAATTCCTTACATGAAGCTTTTTCTTTACAAATACTGCTCAAAATATACCACCGGTAATCCTTCTTATAAAGCAGACGGGTTCGGATTTGTATTTCCTCAAGGCTCCCCACTTGTGGCTGATATATCAAGGCAGATACTGAAAGTAAAAGAGGGAGAGGAGATGAAACTGATCGAACCGAAATGGTTAGGCCAAGAGACCTCCTGCTCATCTTCCAGTCCCGATCCTACTACAACGAGCCTCAATCTCAGTAGCTTTTGGGGCCTTTTTCTAATTGCTGGAATAGCTTCAGCGTTGGTCCTAATTTCAAGCGCCCTAAATTTTCTTTACAAGCAAAGGCATCTTCTCCTCCGAAAGGACCCAAATACGTCGATCTGGAGTAGAATCAAAACAGTATTAAGAATATACGACCAGAGGGATCTCACCTCTCATACTTTCAAAAATAAGGATATAAACGAAGGAAGGGGAATTAGCCCCGGTAATGGAGGACCAGGTTTTGAGGTGGCCTCACCAGAATTCAATTTCACCCGAACTCCATCAGACCATTCAATCATTGAGCAAGAAAGAATTTCGTATGAGGCAGGGGAATCGAGCCACAGCGTCGGAGCTTCTCCGAATATTTTGCCGGATATTGAGATGTGTACTCAAAATCCAGAGATGATAGCAAGATAA 2871 44.51 MNPFVCWGVLVVFLSGFLSAESQNATTLVNVGLVLDLDEEVGKMALSCIDIALSDFYSSHSGYKTRLVLNTRDSMEDVVEVAAAGLDLIKNTKVEAIIRPVSSMHATFLIELGTKVQVPIISFSVTSPMLTSLQSSYFFCIAQNDSTQIQAICSIIQNFGWREVVPIYVENEFGQGIIPYLADALQGIDIHMPYRSTIPSSPTNDQIAAELHKLMTMQTRVFVIHLPPSLASTIFKIAKDIGMMSQGYVWIMTNSIADLLTQIDELVFDSMQGVLGVRTHVPRSDKLVDFKVRWKRKFRQDNPTDLDAQLNVFGLWSYDAAWALAMAVEAALSTSNLGYQKANSTTNRTDLDTFGVSLNGPRIRDELSNTVFTGLSGNFSLFDGQLQSTTFEIVNINGLTGRTIGYWTPKTGVSRTLSSSPSAGATLGTILWPGDSTSTPKGWEIPTNGKKLRVGVPYNNVSFGGFVKITNDSISNATIVTGYCIDIFNAVIKKLPYAIVPDFIPYKTSPNFTYDEMIYQVKLGNFDAVVGDVTITWSRSRFVDFTLPFTESGVIMVVPLTDTSKKNAWVFLRPLSLDLWMTSGCFFIFIGFVVWVLEHRINEDFRGPWTHQLGTSLWFSFSTMVFAHRERVVSNFARCVVVIWFFVVLILTQSYTASLTSLLVQQQQPTVNDVDQLLKNKERVGYQGGSFVLGILISLKFEPDKLVTYGSPEELDDLLSKGSANGGIAAAFDEIPYMKLFLYKYCSKYTTGNPSYKADGFGFVFPQGSPLVADISRQILKVKEGEEMKLIEPKWLGQETSCSSSSPDPTTTSLNLSSFWGLFLIAGIASALVLISSALNFLYKQRHLLLRKDPNTSIWSRIKTVLRIYDQRDLTSHTFKNKDINEGRGISPGNGGPGFEVASPEFNFTRTPSDHSIIEQERISYEAGESSHSVGASPNILPDIEMCTQNPEMIAR 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2559804 2563297 - BLOR08736 Blo18g00248 73552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00248 956 Gene3D - 25 150 - -
Blo18g00248 956 Pfam Ligand-gated ion channel 799 829 IPR001320 GO:0015276|GO:0016020
Blo18g00248 956 Gene3D - 357 450 - -
Blo18g00248 956 Gene3D - 151 308 - -
Blo18g00248 956 Gene3D - 451 567 - -
Blo18g00248 956 SUPERFAMILY Periplasmic binding protein-like II 426 798 - -
Blo18g00248 956 CDD PBP1_GABAb_receptor_plant 30 417 IPR044440 -
Blo18g00248 956 Gene3D - 568 692 - -
Blo18g00248 956 SUPERFAMILY Voltage-gated potassium channels 579 670 - -
Blo18g00248 956 CDD GluR_Plant 450 796 - -
Blo18g00248 956 PIRSF IGluLR_plant 1 897 IPR017103 -
Blo18g00248 956 Pfam Bacterial extracellular solute-binding proteins, family 3 480 798 IPR001638 -
Blo18g00248 956 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 886 - -
Blo18g00248 956 PANTHER GLUTAMATE RECEPTOR 2.9 29 886 - -
Blo18g00248 956 Gene3D - 745 804 - -
Blo18g00248 956 SUPERFAMILY Periplasmic binding protein-like I 29 434 IPR028082 -
Blo18g00248 956 Pfam Receptor family ligand binding region 47 397 IPR001828 -
Blo18g00248 956 SMART GluR_14 453 798 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00681 Blo-Chr3:28581945 Blo18g00248 Blo-Chr18:2559804 6.35E-130 dispersed
Blo15g00498 Blo-Chr15:8409922 Blo18g00248 Blo-Chr18:2559804 4.92E-144 dispersed
Blo15g00499 Blo-Chr15:8416282 Blo18g00248 Blo-Chr18:2559804 1.69E-158 dispersed
Blo17g00171 Blo-Chr17:1730743 Blo18g00248 Blo-Chr18:2559804 0 dispersed
Blo17g00263 Blo-Chr17:2708962 Blo18g00248 Blo-Chr18:2559804 6.51E-170 dispersed
Blo17g00264 Blo-Chr17:2724289 Blo18g00248 Blo-Chr18:2559804 0 dispersed
Blo18g00245 Blo-Chr18:2464399 Blo18g00248 Blo-Chr18:2559804 1.95E-42 dispersed
Blo18g00246 Blo-Chr18:2472502 Blo18g00248 Blo-Chr18:2559804 0 dispersed
Blo18g00248 Blo-Chr18:2559804 Blo18g00250 Blo-Chr18:2607047 2.11E-63 dispersed
Blo18g00248 Blo-Chr18:2559804 Blo18g00249 Blo-Chr18:2590478 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00248 K05387 - pop:18107187 1044.26