Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00249 ATGCTCCAGCTTGCACCGCAGTGGGTGTTGCTTTCGTCGCGAGTGCTCCATCTTGCAACCCAGAGGTTGCTCCTTTCGCTGCGGGTGCTTCAACTTGCATCATGGCTGGTACAATCTAGTGAAACTGACCTACGAGGTCAGTTGCAAGCAGACGGCGTTCACGGGCAGAGTCCGTCGTTTCTACATATGGTTGCGGAGTCGCAGAACGCGACGACGCCGGTGAATGTGGGGTTGGTGCTTGATTTAGATGCAGAAGTTGGGAAGATGGCTCTGAGCTGTATCGATATTGCTCTCTCCGACTTCTATTCCTCCCACGGTGGTTACAAGACCAGGCTCGTACTTAATACCAGAGACTCCATGGAAGACGTTGTTGAAGCTGCAGCTGCAGGCTTGGACCTTATTAAGAACACAAAGGTGGAAGCTATAATCGGATCAGTGAGTTCGGTGCGGGCTACCTTTATAATTGAACTCGGAACTAAATCTCAGGTTCCTATTATTTCATTTTCAGCCATGAGCCCCATGCTAACATCTCTTCAGAGCTCGTATTTTTTCCGCATCGCGCAACAAGACTCTACTCAAATTCAAGTCATTTGTTCAATTATCCAACATTTTGGGTGGAGAGAAGTGGTGCCAATCTACGTAGATAATGAGTTTGGGCAGGGAATTGTACCCTACTTAGCTGATGCATTACAGGGCATTGACGCTCACATGCCTTATAGAAGTGCTATTCCTTCGTCACCCACTAATGATCAAATTGCAGCGGAGCTGTACAAGCTGATGACCATGCAGACTAGAGTTTTTGTTATCCATCTCCTACCTAGTCTGGCTTCGACCATCTTTAAAATGGCAAAAGATATTGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCGATCGCTGATCTTTTGACTCAAATAGATGAATCGATTTTTCATTCGATGCAAGGGGTGCTGGGCGTGAGGACTTATGTTCCGAGATCGGACAAGCTAGTTGATTTCAAAGTGAGATGGAAAAGGAAGTTTCGGCAGGATAATCCGACCGATCTTGATGCTCAACTGAATGTTTTTGGATTCTGGAGTTATGATGCGGCTTGGGCATTAGCCATGGCTGTCGAGGCAGCCCTTTCGACGTCAAACCTTAGCTATCAAAAATCCAATAGCTCAACCAATAGAACTGATCTTGACACTTTTGGGATTTCTCTGAACGGCCCTAGAATTCGCGACGAGCTGTCCAACACAGCATTTACAGGACTGAGCGGGAATTTTAGCCTGAAGGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTTTTACAGGGAGAACCATTGGATATTGGACGCCCAAAACTGGTCTCTCAAGATATTTGATTTCATCTTCTTCGGCTGGAGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAACTCCAAAGGGATGGGAGATTGCAATAAATGGGAAGAAACTGAGAGTAGGAGTTCCTTACAATAATATCGCATTCGGCGGATTTGTGATAATAACAAATGATTCCATCTCAAATGCCACAATTGTCACAGGCTACTGCATAGACATCTTCAATGCAGTTATTAAGAAGCTGCCTTACGCCATTGTTCCTGACTTCATCCCCTATAACCCCAGCCCTAATTTTGCATACGATGAAATGATCTACCAAGTCAAACTCGGGAACTTCGACGCAGTAGTGGGGGACGTGACGATCACTTGGAATAGATCTCGGTTCGTAGATTTTACGTTACCATTCACAGAATCAGGAGTGATAATGGTGGTGCCCCTGATAGACAACTCGAAGAAGAACGCATGGGTGTTCTTGCAGCCTCTGTCGTTGGATCTTTGGATGACAAGTGGTTGCTTCTTCATCTTCATTGGCTTCGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCAGGGGGCCGTGGACTCATCAGCTGGGCACTAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCGCACAGGGAGAGAGTGGTTAGCAATTTCACTAGATTTGTGGTGGTGATATGGTTCTTCGTCGTGCTTATTCTGACCCAGAGCTACACTGCCAGTTTAACCTCGCTTCTCGTCCAACAGCTACAACCTACTGTAAATGATGTGGATCAGCTTTTGAAGAACAAGGAAAGAGTCGGCTACCCAGATGCTTCTTTTGTTCGGGGAATTCTGATTTCCTTAGAATTTGACCATGACAAGCTTGTACCCTATGATAGTTCAGAAGAATTAGATGACCTACTCTCCAAAGGAAGCGCTAATGGCGGCATTGCAGCAGCGTTTGACGAAATTCCTTACATGAAGCTTTTTCTCTCCAAATACTGCTCAAAATACACCACCGGTAATCCTTCTTATAAAGCAGACGGGTTCGGATTTGTATTTCCTCAAGGCTCCCCACTTGTGGCTGATATATCAAGGCAAATACTGAGCGTAACAGAGGGAGACGAGATGAAACTGATCGAACAGAAATGGTTTGGCCAAGAGACCTCCTGCTCATCTTCCAGTCTCGATCCTACTTCAACGAGCCTCAATCTCAGTAGCTTTTGGGGTCTTTTTCTCATTGCTGGCATGGCTTCAGCGTCAGTCCTAATTTCAAGCGCCCTAAATTTTCTTTACAAGCAAAGGGACCTTCTCCTCCGAGCGGACCCAAATACGTCGATTTGGAGTAGAATCAAAACAGTATTAAGACTATACAACCAGCGGGATCCCACCTCTCATACATTCAAAAATAAGGATATAAACGAAGGAAGGGGAATTAGCTCCGGTAATGGAGGACCAGGGCGCTTATTTTATTTTTTGATGGCCTCTTCCAGCACTACTTCCTCTCCTGCCTCTCTGCATACTCCTTCTCTTCCCTCTCTTCCTGCAGTAAATCAATCTCTCCTAGTGAAGCTTGACTCAACCAACTATCTTATCTGGAAAAACCAAATTCTTAATGTCGTAATTGCAAATGGTCTTGAACCCTTTCTCGATGTCTCCTCGGTCTCTCCTCCCCCTTTCCTTGATGCTTCTCGTCTTCAGCCTAATCCACAATACACTGTTTGGCAGCGATACGACAAGCTTCTTCTCAGTTGGCTTTATGCTTCCCTCTCAGAGTCCTTGCTCTCTCAAATAGTCTGCTATTCTACTGCTTTGAGGCTCATGCTACTTGTCTGCAACAAAATCGATCGCCGCAGCCTCCTTTTTACCCCTCTTATCCTTAGTCTTAACCTTCTTCCCTGGCTCCTTCGTACAATGACATCCTTGGTAAGCCTCAGTTCTCTCCTCCTCTGCCTGGAACTTGGCGACTTGGCAAAACTTCTACCGGCCGACCAAAATGCCAAATCTGTTAGAAAATCGGCCACATCGCTGCCTACTGTTATCATCGGTTGA 3426 45.71 MLQLAPQWVLLSSRVLHLATQRLLLSLRVLQLASWLVQSSETDLRGQLQADGVHGQSPSFLHMVAESQNATTPVNVGLVLDLDAEVGKMALSCIDIALSDFYSSHGGYKTRLVLNTRDSMEDVVEAAAAGLDLIKNTKVEAIIGSVSSVRATFIIELGTKSQVPIISFSAMSPMLTSLQSSYFFRIAQQDSTQIQVICSIIQHFGWREVVPIYVDNEFGQGIVPYLADALQGIDAHMPYRSAIPSSPTNDQIAAELYKLMTMQTRVFVIHLLPSLASTIFKMAKDIGMMSEGYVWIMTDSIADLLTQIDESIFHSMQGVLGVRTYVPRSDKLVDFKVRWKRKFRQDNPTDLDAQLNVFGFWSYDAAWALAMAVEAALSTSNLSYQKSNSSTNRTDLDTFGISLNGPRIRDELSNTAFTGLSGNFSLKDGQLQSTTFEIVNINGFTGRTIGYWTPKTGLSRYLISSSSAGAGATLGTILWPGDSTSTPKGWEIAINGKKLRVGVPYNNIAFGGFVIITNDSISNATIVTGYCIDIFNAVIKKLPYAIVPDFIPYNPSPNFAYDEMIYQVKLGNFDAVVGDVTITWNRSRFVDFTLPFTESGVIMVVPLIDNSKKNAWVFLQPLSLDLWMTSGCFFIFIGFVVWVLEHRINEDFRGPWTHQLGTSLWFSFSTMVFAHRERVVSNFTRFVVVIWFFVVLILTQSYTASLTSLLVQQLQPTVNDVDQLLKNKERVGYPDASFVRGILISLEFDHDKLVPYDSSEELDDLLSKGSANGGIAAAFDEIPYMKLFLSKYCSKYTTGNPSYKADGFGFVFPQGSPLVADISRQILSVTEGDEMKLIEQKWFGQETSCSSSSLDPTSTSLNLSSFWGLFLIAGMASASVLISSALNFLYKQRDLLLRADPNTSIWSRIKTVLRLYNQRDPTSHTFKNKDINEGRGISSGNGGPGRLFYFLMASSSTTSSPASLHTPSLPSLPAVNQSLLVKLDSTNYLIWKNQILNVVIANGLEPFLDVSSVSPPPFLDASRLQPNPQYTVWQRYDKLLLSWLYASLSESLLSQIVCYSTALRLMLLVCNKIDRRSLLFTPLILSLNLLPWLLRTMTSLVSLSSLLLCLELGDLAKLLPADQNAKSVRKSATSLPTVIIG 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2590478 2596093 - BLOR08737 Blo18g00249 73553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00249 1141 SMART GluR_14 500 845 IPR001320 GO:0015276|GO:0016020
Blo18g00249 1141 CDD GluR_Plant 497 843 - -
Blo18g00249 1141 CDD PBP1_GABAb_receptor_plant 75 462 IPR044440 -
Blo18g00249 1141 PANTHER GLUTAMATE RECEPTOR 2.9 73 933 - -
Blo18g00249 1141 Gene3D - 510 614 - -
Blo18g00249 1141 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 73 933 - -
Blo18g00249 1141 Gene3D - 196 353 - -
Blo18g00249 1141 Gene3D - 615 733 - -
Blo18g00249 1141 Gene3D - 400 502 - -
Blo18g00249 1141 Pfam Ligand-gated ion channel 846 876 IPR001320 GO:0015276|GO:0016020
Blo18g00249 1141 Gene3D - 69 195 - -
Blo18g00249 1141 SUPERFAMILY Periplasmic binding protein-like I 71 481 IPR028082 -
Blo18g00249 1141 Pfam Receptor family ligand binding region 92 442 IPR001828 -
Blo18g00249 1141 SUPERFAMILY Periplasmic binding protein-like II 473 846 - -
Blo18g00249 1141 Pfam Bacterial extracellular solute-binding proteins, family 3 527 845 IPR001638 -
Blo18g00249 1141 Gene3D - 791 851 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00766 Blo-Chr7:24794939 Blo18g00249 Blo-Chr18:2590478 0 dispersed
Blo11g00899 Blo-Chr11:18036167 Blo18g00249 Blo-Chr18:2590478 3.94E-24 dispersed
Blo18g00248 Blo-Chr18:2559804 Blo18g00249 Blo-Chr18:2590478 0 tandem
Blo18g00249 Blo-Chr18:2590478 Blo18g00250 Blo-Chr18:2607047 1.51E-52 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00249 K05387 - pop:18107187 1051.2