Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00250 ATGAATCCTTTTGTTTGTTGGGCGGTTTTGGTCGTTTTTCTTTCTGGGTTTTTGTCGGCAGAGTCGCAGAACGCGACGACGCCGGTGAATGTGGGGTTGGTGCTTGATTTAGATGCAGAAGTTGGGAAGATGGCTCTGAGCTGTATCGATATTGCTCTCTCCGATTTCTATTCCTCCCACGGTGGTTACAAGACCAGGCTCGTACTTAATACCAGAGACTCCATGGAAGACGTTGTTGAAGCTGCAGCTGCAGGCTTGGACCTAATTAAGAATGCGAAGGTGGAAGCTATAATAGGACCCGTGAGTTCGATGCAGGCTGCCTTCTTGATTGAACTCGGAACTAAAGCTCAAGTCCCAGTTGTTTCATTTTTGGCCACGCCCTATTTTGCATACGATGAAATGATCTACCAAGTCAAACTCGAGAACTTCGACGCAGTAGTGGGGGATGTGACGATCACTTGGAATAGATCTCGGTTCGTAGATTTTACGTTACCATTCACAGAATCAGGAGCGATAATGGTGGTGCCCCTGATAGACAACTCGAAGAAGAACGCATCGGTGTTCTTGCAGCCTCTGTCGTTGGATCTTTGGATGACAAGTGGTTGCTTCTTCATCTTCATTGGCTTCGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCAGGGGGCCCTGGACTCATCAGCTGGGCACTAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCGCACAGGGAGAGAGTGGTTAGCAATTTCGCTAGATTCGTGGTGGTGATATGGTTCTTCGTCGTGCTTATTCTGACCCAGAGCTACACTGCCAGTTTAACCTCGCTTCTCGTCCAACAGCTACAACCTACTGTAAATGATGTGGATCAGCTTTTGAAGAAGAAGGAAAGAGTCGGCTACCCAGATACTTCTTTTGTCCGGGGAATTCTGATTTCCTTAAAATTTGACCCTGACAAGCTTGTAGCCTATGGTAGTCCAGAAGAATTAGATGACCTACTCTCCAAAGGAAGCGCTAATGGCGGCATTGCAGCAGCGTTTGACGAAATTCCTTACATGAAGCTTTTTCTTTCCAAATACTGCTCAAAATATACCACCGGTCATCCTTCTTATAAAGCAGACGGGTTCGGATTTGTATTTCCTCAAGGCTCCCCACTTGTGGCTGATATATCAAGGCAAATACTGAGGGTAACAGAGGGAAACGAGATGAAACTGATAGAAGAGAAATGGTTTGGCCAAGAGACCTCCTGCTCATCTTCCAGTCCCGATCGTACTTCAACGAGCCTCAATCTCAGTAGCTTTTGGGGCCTTTTTCTCATTGCTGGAGTGGGTTCAGCGTTAGTCCTAATTTCAAGCGCCATAAATTTTCTTTACAAGCAAAGGCATCTTCTCCTCCGAACGGATCCAAATGAGTCGATCTGGAGTAGAATCAAAATAGTGTTAAGACAATACAACCAGAGGGATCTCACCTCTCATGCTTTCAAAAATAAGGATATAAACGAAGGAAGGGGAATTAGCCCCGGTAATGGAGGACCAGGTTTTGAGGTGGCCTCACCAGAATTCAGTTTCATTCGAAGTCCATCAGACCATTCAATCAGCAGGGAAGGGAATGTTCGGTTCTTCATAAAGCAAGAAAAAATTTCGTATGAGGCCGGGGAATCGAGCCACAGCTTCGGAGCTTCCTCGAATATTATGCCGGCGATTGAGCTGTGTACTTAA 1725 45.97 MNPFVCWAVLVVFLSGFLSAESQNATTPVNVGLVLDLDAEVGKMALSCIDIALSDFYSSHGGYKTRLVLNTRDSMEDVVEAAAAGLDLIKNAKVEAIIGPVSSMQAAFLIELGTKAQVPVVSFLATPYFAYDEMIYQVKLENFDAVVGDVTITWNRSRFVDFTLPFTESGAIMVVPLIDNSKKNASVFLQPLSLDLWMTSGCFFIFIGFVVWVLEHRINEDFRGPWTHQLGTSLWFSFSTMVFAHRERVVSNFARFVVVIWFFVVLILTQSYTASLTSLLVQQLQPTVNDVDQLLKKKERVGYPDTSFVRGILISLKFDPDKLVAYGSPEELDDLLSKGSANGGIAAAFDEIPYMKLFLSKYCSKYTTGHPSYKADGFGFVFPQGSPLVADISRQILRVTEGNEMKLIEEKWFGQETSCSSSSPDRTSTSLNLSSFWGLFLIAGVGSALVLISSAINFLYKQRHLLLRTDPNESIWSRIKIVLRQYNQRDLTSHAFKNKDINEGRGISPGNGGPGFEVASPEFSFIRSPSDHSISREGNVRFFIKQEKISYEAGESSHSFGASSNIMPAIELCT 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2607047 2610605 - BLOR08738 Blo18g00250 73554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00250 574 Pfam Bacterial extracellular solute-binding proteins, family 3 128 415 IPR001638 -
Blo18g00250 574 PANTHER GLUTAMATE RECEPTOR 2.9 28 127 - -
Blo18g00250 574 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 127 - -
Blo18g00250 574 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 130 503 - -
Blo18g00250 574 CDD GluR_Plant 131 413 - -
Blo18g00250 574 PANTHER GLUTAMATE RECEPTOR 2.9 130 503 - -
Blo18g00250 574 Gene3D - 17 154 - -
Blo18g00250 574 Pfam Ligand-gated ion channel 416 446 IPR001320 GO:0015276|GO:0016020
Blo18g00250 574 Gene3D - 180 303 - -
Blo18g00250 574 Gene3D - 344 378 - -
Blo18g00250 574 SUPERFAMILY Voltage-gated potassium channels 194 282 - -
Blo18g00250 574 Gene3D - 379 413 - -
Blo18g00250 574 SUPERFAMILY Periplasmic binding protein-like II 130 416 - -
Blo18g00250 574 SMART GluR_14 115 415 IPR001320 GO:0015276|GO:0016020
Blo18g00250 574 SUPERFAMILY Periplasmic binding protein-like I 28 129 IPR028082 -
Blo18g00250 574 Pfam Receptor family ligand binding region 47 133 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00248 Blo-Chr18:2559804 Blo18g00250 Blo-Chr18:2607047 2.11E-63 dispersed
Blo18g00250 Blo-Chr18:2607047 Blo07g00766 Blo-Chr7:24794939 5.81E-31 dispersed
Blo18g00249 Blo-Chr18:2590478 Blo18g00250 Blo-Chr18:2607047 1.51E-52 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00250 K05387 - pop:18107174 486.878