Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00251 ATGCTTACGGAGATCGCCCGAGTCTTCCGATTTGTTAGCCTCTCGTGTAAAAATGAAGAGAATAAGGATTATGCTATAGAGTCAGAAGAGATAGGAAAGGGTTGGGCAATTTCAGCGAAGGTCGGTGGCTATGACCTGTCCGCCAAGAAACCGACTAGGATTAATCGAAGGAACGCGGCAAAAAGTGGAAGGATTTGGGTTCTAAGCATTGGGAGCGAATCGGAAGAAGATATGGAATCGGAGGATGCAGTGAAGAGTAAATTGGAGGAATTGCAGAAAGATTTGGGCAGGAAGCTGAAATTCGAAGATGCTATCGCTTCTCTCTTTTCTCTGTTTCGCGATCGATATCCCTCTGCCTCTCCGTCTCTCCGAAAATCGTTATATTCTTCGGTATGCCGAGCTGCAACTGTTCTGAAAACGAGGTATACATCCCCTGGTTTTTGGATCGCGGGGCTAGGGCTTTTTGAGCTGGCGTATTCTATGGTTTCTGATTCTTCTGAGAAGCAGCATTTGAAAACTTGTGTTACCCAAGCTAAGGAAATTTTGAGTCAAGCAGAAAACCCCTCTCTATCGCAACAAAATACGCCACCGAATAGAGGATATCTTTTTGAAGGACACCTGACTGTGGATCCAGAGCCCCCTCAGCCTCAGTGGTTGGTGCAATCAAATCTATTGACTACCGCGGCTACTCTTTTTCAAGCTGAATCTTCTCAAGTTCCATCTGAAAACAATGAGTTATCTGAAACAACTGCCAATGTTATTCAAGCACTCATTGACAACTTGGATAGTGTTTTACCGGAGTTTCTTATCACTGCTTCTGTCTTTAAGATATTGGAGAACGACCATATGGCCCCAAGAGCTCCCCCTGCGAGTAAAGAAGTTGTTGCAAACCTTCCTGTCATTACCATTACAGATGAAATCCTTTCCAAGCTAGCAAAAGATGCAGAGTGTGCTATTTGTAAAGATGATTTATCTGTTAATGACAAGATGCAAGAGTTGCCTTGCAAGCATACATTTCATCCTCCATGTCTAAAGCCATGGCTGGATGAGCATAATTCTTGTCCAATCTGTCGTCATGAGTTGCTAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGGGAAAAAGAGGCAGAAGAAGAGAGGAAAGGAGCTGCGAATGCCATTAGAGGTGGTGAATACATAGGCAAGGGGCAGGAGCAGGAACAGGAGCAGGTGCTGCCTATTTCTTGCCCCTTTCATGCTGTTCCACGTGGCATTCAGTATTCTTTGATTGGTTCCTTTTATTTTGCTCACGTGGCACCAGATTCCCCACCCACGAGAGCTAAACAGCCGTTCGATTTGACCAGTCTTATCGTGGCCCACACCCACAGCCGTGAATCGTAG 1386 45.31 MLTEIARVFRFVSLSCKNEENKDYAIESEEIGKGWAISAKVGGYDLSAKKPTRINRRNAAKSGRIWVLSIGSESEEDMESEDAVKSKLEELQKDLGRKLKFEDAIASLFSLFRDRYPSASPSLRKSLYSSVCRAATVLKTRYTSPGFWIAGLGLFELAYSMVSDSSEKQHLKTCVTQAKEILSQAENPSLSQQNTPPNRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFQAESSQVPSENNELSETTANVIQALIDNLDSVLPEFLITASVFKILENDHMAPRAPPASKEVVANLPVITITDEILSKLAKDAECAICKDDLSVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELLTDDHAYESWKEREKEAEEERKGAANAIRGGEYIGKGQEQEQEQVLPISCPFHAVPRGIQYSLIGSFYFAHVAPDSPPTRAKQPFDLTSLIVAHTHSRES 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2648051 2657029 + BLOR08739 Blo18g00251 73555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00251 461 SUPERFAMILY RING/U-box 311 364 - -
Blo18g00251 461 CDD RING-H2_RNF126_like 316 358 - -
Blo18g00251 461 Pfam Ring finger domain 316 358 IPR001841 -
Blo18g00251 461 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
Blo18g00251 461 PANTHER ABI3-INTERACTING PROTEIN 2-1 80 392 - -
Blo18g00251 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 392 - -
Blo18g00251 461 Coils Coil 368 388 - -
Blo18g00251 461 SMART ring_2 317 357 IPR001841 -
Blo18g00251 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 363 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00251 Blo-Chr18:2648051 Blo13g00102 Blo-Chr13:1820125 2.01E-22 dispersed
Blo18g00251 Blo-Chr18:2648051 Blo15g00039 Blo-Chr15:335308 2.24E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00251 K16274 - zju:107420142 436.417