Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00254 ATGGGTGGTCGTGTAGTTGAGGTGATAAGCAGCAAAGGGTGTTCTAGACTTTTTGTTGGGGCGTCATCTCCATCATCTTCCTTCAGAGGCAATCCACCATCCGACCCAATGCCTCCTGCTTCATCCTCTCTGGTGTCTGAACCGGTGAAACCTCCATCAAACGGTCCATTTACCGGTCTCGTTATCTGCGTTACCGGTTTGTCCAAAGAAGCTCGAAAACAAGTGATGGAAGCAACAGAGAGATTAGGGGGTCAGTATAGCCCCAACTTGCATCCCCAGTGTACTCATTTGGTGGTTCAAATATCCTTGAAATTCGATCATGCATTGAAGCACGGATCGAAAAACAGACTCTTTGTTGTTACGATCGGATGGTTTGTTGACAGTGTTAGGCGGAATGTGAGGATGAGCGAGTCGCAGTATAGTATCAAGGGTGTCGAAGAAAATGCTTTACACTTAAATGGATCGAATAAAACTGTCGGATATATCACCGGTTCTGAAAATTCCTGTCTTCCGATCGGAATGCATGGAAACAAGCAGGCTGACACGAGTAAAGAACAGCATCCAACAACACTCGAAAGAGAGGCCAATAAAAACATTGGCTCAACCCTTTCGGGCCAATCCTTGTACATCGACAAAAACATTCCTCTCCAGCTGCGGAACAAGGTTGCTGAAACTGCTGCTAGAGAAGGTGCCTCCTTGGTAGATCAATGGTTTGTTGGTTGTAGCACCAGTCATGTGGTTTGTGAAGAGACTTCTGTACAAAAATATTTTGGTCATTCAAGCAATCTAGTTACACCACTGTGGGTCCTGAAAACAGCTGAGAAGAAACGGGTGCAAAAACTATTCCACGTGTCGGCTGACTTGGCTAGGCAGGTCGGCACGATCCTTGAAGATTTTCAAAATAACATTCCTGGAGAGGAAAATGGTGCTGAAGATGGAGAGAATTTTAGAAGAAGAAAAACGAGTCAAGCCGAACGGGAACAGATTGTCAACAATGCTAAACTTGGCGTTAGAAAGCGTCGCAGTCACCGAATGCAGACTTGCCAAATCCCAATGCATCCGATAACTCCGGGCCGGCTTCTGGATTCGGTCTGCTGGACAATATCTGAGCCAACCTCGTCTGCTTCTATTTACACAGATTCTTTCAGCGGTGAAGCCGCTAGCGAGTACCATACGAGCTTGTCTTTCGATGCTAAAGACGATGAAATAGAATCAGCGGCTTTGTTTGCAAATTTAACCCGACCGCTCACACAAAGTGAGAAATCTGAATGTATATTGAAAATCCATTTCCTGACGATCTTGTTTCCGGTCGACCAATTTGCCGAGATGGGACCTTCATCAAGAACATTTTTTAACAGCAATGGCTTCACATGTTTGCAGGTTTTGGATCACATCTATGCCTTTTATCAGGAGAAGATGTCAATTCACGAGGTAGAAGCTGCAATTCACACGGATTCAAGGCATGCTGACCGGCTTCGAGCAGTGTACTCGAGTAGAGCAACTGCAGAACAAGGACTTACTATTTTCAAACGGATTGATTTCTTGGGCAGCCGTAAAAGTTTTGAAATGTTGAAACGGGTCAGTGGCGATAACAACAGTAACGTATATGAACTGTTAATCAGAGCATGA 1629 45.0 MGGRVVEVISSKGCSRLFVGASSPSSSFRGNPPSDPMPPASSSLVSEPVKPPSNGPFTGLVICVTGLSKEARKQVMEATERLGGQYSPNLHPQCTHLVVQISLKFDHALKHGSKNRLFVVTIGWFVDSVRRNVRMSESQYSIKGVEENALHLNGSNKTVGYITGSENSCLPIGMHGNKQADTSKEQHPTTLEREANKNIGSTLSGQSLYIDKNIPLQLRNKVAETAAREGASLVDQWFVGCSTSHVVCEETSVQKYFGHSSNLVTPLWVLKTAEKKRVQKLFHVSADLARQVGTILEDFQNNIPGEENGAEDGENFRRRKTSQAEREQIVNNAKLGVRKRRSHRMQTCQIPMHPITPGRLLDSVCWTISEPTSSASIYTDSFSGEAASEYHTSLSFDAKDDEIESAALFANLTRPLTQSEKSECILKIHFLTILFPVDQFAEMGPSSRTFFNSNGFTCLQVLDHIYAFYQEKMSIHEVEAAIHTDSRHADRLRAVYSSRATAEQGLTIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2686637 2689743 + BLOR08742 Blo18g00254 73558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00254 542 SUPERFAMILY BRCT domain 201 279 IPR036420 -
Blo18g00254 542 ProSiteProfiles BRCT domain profile. 52 142 IPR001357 -
Blo18g00254 542 SUPERFAMILY BRCT domain 51 143 IPR036420 -
Blo18g00254 542 MobiDBLite consensus disorder prediction 19 52 - -
Blo18g00254 542 SMART BRCT_7 54 132 IPR001357 -
Blo18g00254 542 SMART BRCT_7 200 276 IPR001357 -
Blo18g00254 542 ProSiteProfiles BRCT domain profile. 198 278 IPR001357 -
Blo18g00254 542 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 542 - -
Blo18g00254 542 CDD BRCT_TopBP1_rpt2_like 55 132 - -
Blo18g00254 542 MobiDBLite consensus disorder prediction 302 325 - -
Blo18g00254 542 Gene3D BRCT domain 55 144 IPR036420 -
Blo18g00254 542 Pfam Family of unknown function (DUF6699) 450 526 IPR046522 -
Blo18g00254 542 Pfam BRCA1 C Terminus (BRCT) domain 55 128 IPR001357 -
Blo18g00254 542 MobiDBLite consensus disorder prediction 310 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00254 - - - zju:107420116 725.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00837 Blo-Chr6:31605786 Blo18g00254 Blo-Chr18:2686637 5.48E-08 transposed
Blo17g00268 Blo-Chr17:2784348 Blo18g00254 Blo-Chr18:2686637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36