Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00262 ATGGGTTCGGGCAGAAACGAAGGGTACGAGTCGGGCGATCCAGGTCCCAGCGGAGATGCGATTCCCTCCGATTCGAACGAGCCACGGCAGTTTCCTCCTGCTGCTCAACCGGAAATAATGAGAGCTGCCGAGAAAGACGACCAGTACGCCTCTTACGTCTACGAAGCCTGTCGCGACGCTTTCCGTCACCTCTTTGGTACAAGACTTGCTGTAGCTTACCAGAATGAGACAAAACTTCTTGGACAGATGCTATATTATATTTTAACAACTGGTTCAGGGCAGCAAACTCTGGGAGAAGAATACTGCGACATCACTCAGGTTGCAGGCCCTTACGGACTCCCTCCAACCCCAGCAAGACGTGCTCTTTTCATTGTATACCAGACTGCTGTTCCATACATTGCAGAACGAATTAGCTCCAGAGTTGCATCACGTGGCATTATTCTTGCTGATTCACAGTCTGATGAGTTTTACAGAAATAGTGTTCCAATGGAGAACATTAATCAGCCTATGGCAAGTGAAATCACTTTTGCCTCTGAGCCAACGGCTTCTCTTCCTGCTTATAACAGGCTGAGGGAGAAATTCAATGAACTTTGTCTCTATGTGACTCAAAAATGGCCTTCGGTGCTGCCCATAGCTCGTGAATTTTTGCAGTTGGTACTGCGGACTAATCTCATGTTCTTCTATTTTGAAGGTCTTTACTATCATATATCAAAACGCTCTGCGGGAATCCGTTATGTGTTCATTGGCAAACCATCAAATCAAAGACCTAGATATCAAATATTGGGTGTATTTCTATTGATTCAACTTTGTATCATTGCTGCTGAAGGACTTAGACGCCGTAATTTATCATCTATTGTGAGTTCAGTTAATCAGACATCCTTTGGGACCCACCATTCTGCAGGAGGTTTGCCCATTTTAAATGAGGAAGGCAGCTTGATATCTGTTGATGGGAGTAGAGGAAACTGGATTTCTGATTCTTCGACCATCTCCGAGGCTCAAGCAATTGGTGGAATTAGCAAATGCACTCTATGCCTGAGTGATCGCCATCATCCCACAGCCACATCTTGTGGCCATGTGTTCTGCTGTGTTCTGCATAAGGGAACGAGCGATTACCAGGAAATAGCTCTAATTGACACAAAGCGTTTTGGGAAGGCATTGATGATTGATGGGAAGATGCAAAGTGCAGAAGTGGATGAATTTATTTATCACGAGTGCTTGATTCATCCTCCTCTTCTATATCATTCTGAGCCAAAAACCATTTTCATCATGGGAGGTGGGGAAGGTTCGTCAGCAAGAGAAGCACTCAAGCATAGTTCTATAGAGAAAGTTGTTATGTGCGATATAGACAAGGAAGTGGTGGATTTCTGTCGAAAATATTTGACTGTAAATCAGGAAGCCTTTCGCCATAAGAAGCTTGAACTTATCATTAATGATGCAAAGGCTGAATTAGAGAGTAGGAAAGAAAAGTTTGACGTCATAGTCGGAGACTTGGCGGACCCGGTTGAAGACGGGCCCTGTTATCAACTGTATACAAAATCCTTCTACCAGAAAATTCTCAAGCCCAAGCTCAATGAAAATGGCATTTTTGTAACACAGGCTGGGCCAGCAGGTATTCTCACCCACAAGGAGGTCTTCACATCCATATACAACACTATCAAACAAGTCTTTAAGTATGTGGCGGTTTACACTGCACATATACCATCTTTTGCAGACACATGGGGATGGGTTATGGCGTCGGACAAACCATTCTCCATTGAATGTGGAGAGATAGATCGAAGAATTGAGAAGAGAATCGACGGCGAGTTGTTCTTCTTAAACGGTGCTGTTTTCGTCTCATCTACGACTATGAATAAGACTGTTTTGTCCTCGTTGTTGAATGAAACTCATGTCTACACGGAAGAAGATGCAAGGTTTATTCATGGACATGGTGTGGCTTGCAGACATTGA 1947 44.02 MGSGRNEGYESGDPGPSGDAIPSDSNEPRQFPPAAQPEIMRAAEKDDQYASYVYEACRDAFRHLFGTRLAVAYQNETKLLGQMLYYILTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAVPYIAERISSRVASRGIILADSQSDEFYRNSVPMENINQPMASEITFASEPTASLPAYNRLREKFNELCLYVTQKWPSVLPIAREFLQLVLRTNLMFFYFEGLYYHISKRSAGIRYVFIGKPSNQRPRYQILGVFLLIQLCIIAAEGLRRRNLSSIVSSVNQTSFGTHHSAGGLPILNEEGSLISVDGSRGNWISDSSTISEAQAIGGISKCTLCLSDRHHPTATSCGHVFCCVLHKGTSDYQEIALIDTKRFGKALMIDGKMQSAEVDEFIYHECLIHPPLLYHSEPKTIFIMGGGEGSSAREALKHSSIEKVVMCDIDKEVVDFCRKYLTVNQEAFRHKKLELIINDAKAELESRKEKFDVIVGDLADPVEDGPCYQLYTKSFYQKILKPKLNENGIFVTQAGPAGILTHKEVFTSIYNTIKQVFKYVAVYTAHIPSFADTWGWVMASDKPFSIECGEIDRRIEKRIDGELFFLNGAVFVSSTTMNKTVLSSLLNETHVYTEEDARFIHGHGVACRH 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2786909 2799346 + BLOR08750 Blo18g00262 73566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00262 648 SUPERFAMILY RING/U-box 338 362 - -
Blo18g00262 648 MobiDBLite consensus disorder prediction 1 35 - -
Blo18g00262 648 Pfam Spermidine synthase tetramerisation domain 363 396 IPR035246 -
Blo18g00262 648 Pfam Pex2 / Pex12 amino terminal region 46 279 IPR006845 -
Blo18g00262 648 CDD AdoMet_MTases 424 532 - -
Blo18g00262 648 Hamap Polyamine aminopropyltransferase [speE]. 321 626 IPR001045 GO:0003824
Blo18g00262 648 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 347 580 IPR030374 -
Blo18g00262 648 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 363 620 IPR029063 -
Blo18g00262 648 Coils Coil 469 489 - -
Blo18g00262 648 Gene3D Vaccinia Virus protein VP39 396 647 IPR029063 -
Blo18g00262 648 PANTHER BNAA02G04280D PROTEIN 361 648 - -
Blo18g00262 648 Pfam Spermine/spermidine synthase domain 399 578 - -
Blo18g00262 648 Gene3D Spermidine synthase, tetramerisation domain 347 395 IPR037163 -
Blo18g00262 648 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 361 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00262 K13346 PEX10; peroxin-10 - jre:108985235 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00544 Blo-Chr2:9361029 Blo18g00262 Blo-Chr18:2786909 2.92E-144 dispersed
Blo16g00968 Blo-Chr16:37950902 Blo18g00262 Blo-Chr18:2786909 1.90E-134 dispersed
Blo18g00262 Blo-Chr18:2786909 Blo01g00399 Blo-Chr1:4520270 1.57E-28 dispersed
Blo18g00262 Blo-Chr18:2786909 Blo06g00871 Blo-Chr6:32025650 1.60E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006593 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00262 Blo_Chr18 FPKM 0.52691 0.484728 0.274994 0.15733 0.228973 0.340276 0.174096 0.146677 0.187322 0.139545