Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00268 ATGGAAAGCAAGCTCTGCGAATCACCGGTGGAAGGAAGTGTAGCCATTAATAGCTTCTCTGAAACTCCCTTGCACGTAACCGCCATGGCTGGAAACACAGAGATTGTCAAGGAGATGCTACGGAGAGAACCTGAGTATGCTAAGGCGCTTGATTCACGAAGTTCTTCCCCGCTTCACTTAGCTTCTGCAAAAGGGCATGTAGAAATTGTAAGAGAGCTGCTCAAAGTTGATTCTGATACGTGTTTTGCTCGCGATGAGGATGGAAGAAACCCTCTTCACCTGGCAGCCATGAAAGGAAGGATCGATGTTTTGAAAGAGCTGCTCCGAGCAAGACCGGAGGCTGCTCTAGCCGGTGCGGAACAGGGTGGAACCATACTGCATACTTGCGTGAAGAACAATCAATTGGAGGCCCTGAAGATTCTGGTGGAGGCTATAAATGATGACCAATTTATGAACAAGAAGGATGATTTTGGCTTCACCTTTCTCGACTTGGCAGTCTTGAACAAACAACTTCAGACTGTAAATTTTTTTATCACAAGACTACGGATAGAAAAGAATGCGTTGCCCTCAAATGAGATCACCCATTTGGACATTGTAAATCAAAGTCCTCGAGACCCTAAAGATCTGAATATTGCAGTGAATCTCCGAGCTGACGGAGCATCCGGACCAACAGCCAATTTCATTCCCCCGTCGGCCGGCAAGCAGAAAAAAGACTCTCAAACTGCAGGGGCAATAAACTACACTTTACTGAATCGCAAACGTGAGAGGAAAAAAAGGCTAGCAAACAAAAAAAACGCAATAATGGTGGTTGCATCGTTGGTAGCAACCATGGCTTTCGCAGCCGGACTAACCCCTCCGGGCGGCCTTTGGCAAGACAACTCCAAGAAAGACGAACCTGAACAACACGAGGCCGGAAAATCAATACTTGCTTCCGATAATCATCCAGCCTTGCCTTTAGCAAATCGATTTTATGGGTATGTGTTTTTCAACACAATCGGATTAGTAGCTTCGTTAAGCGTAATAATGCTGCTAATCACTGGGCTGCCATTCAAGAGACGATTTTTCATGTGGGTTCTAACGATAATCATGTGGGTGGCCATATGTTCAATGGCGATGACTTACCTTTTTGCGATGATAAATTTAATTCCGGAGAACAAGGTGGACGAAACGTTACCAATAATTTCCCACGGATTAATAATCTGGATTGCTGTAATGGGCTTTGTCGTTTTGGGACACACCATCTACCTCGTCATGCTGTGTCGGAAACGGAAAGTACATCGGACTCTGCTCAAAAAGACACCTGTTGTTCCATCACATGCCCTCCCAGTTTAA 1332 45.42 MESKLCESPVEGSVAINSFSETPLHVTAMAGNTEIVKEMLRREPEYAKALDSRSSSPLHLASAKGHVEIVRELLKVDSDTCFARDEDGRNPLHLAAMKGRIDVLKELLRARPEAALAGAEQGGTILHTCVKNNQLEALKILVEAINDDQFMNKKDDFGFTFLDLAVLNKQLQTVNFFITRLRIEKNALPSNEITHLDIVNQSPRDPKDLNIAVNLRADGASGPTANFIPPSAGKQKKDSQTAGAINYTLLNRKRERKKRLANKKNAIMVVASLVATMAFAAGLTPPGGLWQDNSKKDEPEQHEAGKSILASDNHPALPLANRFYGYVFFNTIGLVASLSVIMLLITGLPFKRRFFMWVLTIIMWVAICSMAMTYLFAMINLIPENKVDETLPIISHGLIIWIAVMGFVVLGHTIYLVMLCRKRKVHRTLLKKTPVVPSHALPV 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2858190 2859593 + BLOR08756 Blo18g00268 73572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00268 443 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 14 420 - -
Blo18g00268 443 SMART ANK_2a 19 48 IPR002110 GO:0005515
Blo18g00268 443 SMART ANK_2a 121 151 IPR002110 GO:0005515
Blo18g00268 443 SMART ANK_2a 87 116 IPR002110 GO:0005515
Blo18g00268 443 SMART ANK_2a 53 82 IPR002110 GO:0005515
Blo18g00268 443 SMART ANK_2a 157 187 IPR002110 GO:0005515
Blo18g00268 443 Pfam Domain of unknown function 258 378 IPR026961 -
Blo18g00268 443 PANTHER HOMEOBOX PROTEIN WARIAI 14 420 - -
Blo18g00268 443 Pfam Ankyrin repeats (3 copies) 55 109 IPR002110 GO:0005515
Blo18g00268 443 Pfam Ankyrin repeats (3 copies) 121 186 IPR002110 GO:0005515
Blo18g00268 443 ProSiteProfiles Ankyrin repeat region circular profile. 53 79 - -
Blo18g00268 443 ProSiteProfiles Ankyrin repeat region circular profile. 87 109 - -
Blo18g00268 443 SUPERFAMILY Ankyrin repeat 16 199 IPR036770 -
Blo18g00268 443 Gene3D - 5 205 IPR036770 -
Blo18g00268 443 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Blo18g00268 443 ProSiteProfiles Ankyrin repeat profile. 87 119 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00268 - - - cit:102608604 364.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00277 Blo18g00268 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00265 Blo-Chr18:2824144 Blo18g00268 Blo-Chr18:2858190 0 dispersed
Blo18g00266 Blo-Chr18:2831418 Blo18g00268 Blo-Chr18:2858190 1.86E-142 dispersed
Blo18g00268 Blo-Chr18:2858190 Blo18g00270 Blo-Chr18:2873144 0 dispersed
Blo18g00267 Blo-Chr18:2840441 Blo18g00268 Blo-Chr18:2858190 0 tandem
Blo18g00268 Blo-Chr18:2858190 Blo18g00269 Blo-Chr18:2867512 6.25E-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00268 Blo_Chr18 FPKM 7.622249 7.919267 2.113664 2.197304 21.559402 22.298067 23.94825 1.86367 1.827484 1.769055