Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo18g00271 | ATGAGGATCGGGTCGCCTGACCCGGCGGTTCTATTAGGCCGTCTTCGGGTCGTGACAGTCAAGGTCTATCGATACTTGAAACCGTGGATCATTCTGGAGCTCGAAGTGACGTTTCTTCCTCGAGCTCGAGACGATGAATGTCTAATTCTCGCGAGTGATGGTTTGTGGGACGTAATGTCCAACGAAGAGGCATGTGACTTGGCTCGGAGACGAATTCTCCTCTGGCACAAAAAGAACGCCTCCCTTAATCTAACCCACGAAAGGGACGGAGGAATCGACCCTGCAGCCCAAGCGGCAGCCGAGTACCTATGCAACAGAGCTCTTCAGAATTGTAGTAAAGACAACATTACTGTGATCGTAGTGGACTTGAAAGCTCAGAGGAAGTTCAAGATAAAAACATGA | 402 | 49.75 | MRIGSPDPAVLLGRLRVVTVKVYRYLKPWIILELEVTFLPRARDDECLILASDGLWDVMSNEEACDLARRRILLWHKKNASLNLTHERDGGIDPAAQAAAEYLCNRALQNCSKDNITVIVVDLKAQRKFKIKT | 133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 2877399 | 2878287 | - | BLOR08759 | Blo18g00271 | 73575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo18g00271 | 133 | CDD | PP2Cc | 23 | 123 | IPR001932 | - | |
| Blo18g00271 | 133 | Gene3D | - | 5 | 133 | IPR036457 | - | |
| Blo18g00271 | 133 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 123 | IPR001932 | - | |
| Blo18g00271 | 133 | PANTHER | PROTEIN PHOSPHATASE 2C 6-RELATED | 24 | 133 | - | - | |
| Blo18g00271 | 133 | PANTHER | ALPHABET, ISOFORM E-RELATED | 24 | 133 | - | - | |
| Blo18g00271 | 133 | SUPERFAMILY | PP2C-like | 12 | 124 | IPR036457 | - | |
| Blo18g00271 | 133 | Pfam | Protein phosphatase 2C | 33 | 116 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo18g00271 | Blo-Chr18:2877399 | Blo06g00743 | Blo-Chr6:30639831 | 1.27E-39 | dispersed | |
| Blo18g00271 | Blo-Chr18:2877399 | Blo18g00273 | Blo-Chr18:2890480 | 7.55E-72 | proximal | |
| Blo17g00280 | Blo-Chr17:2952936 | Blo18g00271 | Blo-Chr18:2877399 | 9.04E-54 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo18g00271 | K14497 | - | han:110877781 | 179.874 |