Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00276 ATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGATACTCGTCAATATGATACTAAAATGAACGAATTACTTGGTGGAGAAGCACAGGATTTTTTCACTTCATATGATGAGGTCCACGAGAGCTTTGATGCCATGGGTTTGCAGGAGAACCTCTTGAGGGGCATATATGCATATGGTTTTGAAAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCCTTCTGCAAGGGAATTGATGTAATTCAACAAGCACAGTCAGGAACTGGAAAAACAGCAACTTTCTGCTCCGGTATTTTGCAGCAGTTGGATTATGGGTTAGTTGAATGCCAGTCATTAGTCCTTGCACCCACCCGAGAACTTGCACAGCAGATTGAGAAGGTTATGCGTGCACTTGGCGACTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAAGACCAACGCATTCTTTCTAGTGGAGTTCATGTTGTTGTCGGTACCCCTGGTCGTGTGTTTGACATGTTGAGGAGACAATCACTTCGTCCTGATCATATAAAAATGTTTGTGCTGGACGAAGCAGATGAGATGCTTTCACGTGGTTTCAAGGATCAGATCTATGATATCTTTCAATTGCTGCCACCAAAAATTCAGGTTGGGGTTTTCTCTGCCACTATGCCGCCTGAGGCTCTTGAGATTACAAGGAAGTTCATGAATAAACCGGTGCGAATTCTGGTAAAACGAGATGAGCTCACCCTAGAGGGCATTAAGCAATTCCATGTCAATGTTGATAAAGAGGAATGGAAGCTAGACACGTTGTGTGACCTTTATGAAACTTTGGCAATTACCCAAAGTGTCATATTTGTTAATACTAGGCGTAAGGTTGATTGGCTGACTGACAAAATGCGCAGTCGAGATCACACTGTCTCAGCCACCCATGGCGATATGGATCAAAATACCAGAGATATTATCATGCGGGAGTTCCGATCTGGTTCATCCCGTGTCCTCATCACTACTGATCTCTTGGCTAGAGGTATTGATGTCCAACAAGTCTCACTTGTGATAAATTATGATCTTCCAACTCAACCAGAGAATTACCTCCATCGAATCGGTCGTAGTGGACGATTTGGTAGAAAGGGGGTAGCCATCAATTTTGTGACATCGGATGATGATAGAATGCTAGTTGACATCCAGAAGTTCTATAATGTTGTGGTCGAGGAGTTGCCAGCAAATGTGGCCGATCTCCTTTGA 1242 44.04 MAGLAPEGSQFDTRQYDTKMNELLGGEAQDFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLVDIQKFYNVVVEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2930723 2932407 + BLOR08764 Blo18g00276 73580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00276 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Blo18g00276 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Blo18g00276 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Blo18g00276 413 PANTHER RNA HELICASE 23 413 - -
Blo18g00276 413 Gene3D - 249 413 IPR027417 -
Blo18g00276 413 Gene3D - 30 248 IPR027417 -
Blo18g00276 413 CDD SF2_C_DEAD 253 383 - -
Blo18g00276 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Blo18g00276 413 SMART ultradead3 59 256 IPR014001 -
Blo18g00276 413 CDD DEADc_EIF4A 44 242 - -
Blo18g00276 413 SMART helicmild6 293 374 IPR001650 -
Blo18g00276 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Blo18g00276 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Blo18g00276 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Blo18g00276 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00741 Blo-Chr6:30606618 Blo18g00276 Blo-Chr18:2930723 0 dispersed
Blo16g00437 Blo-Chr16:17295539 Blo18g00276 Blo-Chr18:2930723 4.68E-89 dispersed
Blo17g00022 Blo-Chr17:127366 Blo18g00276 Blo-Chr18:2930723 2.81E-63 dispersed
Blo18g00276 Blo-Chr18:2930723 Blo18g00679 Blo-Chr18:13692999 2.51E-63 dispersed
Blo07g00625 Blo-Chr7:19593452 Blo18g00276 Blo-Chr18:2930723 1.48E-171 transposed
Blo07g01373 Blo-Chr7:33851653 Blo18g00276 Blo-Chr18:2930723 3.01E-65 transposed
Blo17g00282 Blo-Chr17:2994560 Blo18g00276 Blo-Chr18:2930723 1.23E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00276 K03257 - sly:101252510 790.801