Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00278 ATGGAAGAAGACGGGGGAAGAAGCCAGTTTAGGAGGATTTGTGTCTTCTGCGGAAGCAACTCCGGCCATAGGAAAGTCTTCAGCGATGCTACTCTTGAATTGGGCAATGAACTGGTCAAAAGAAGAATAGATTTGGTATATGGTGGGGGAAGTGTTGGGTTGATGGGTTTGATATCACAGAGAGTGTATGACGGAGGTTGCCATGTTCTTGGGGTCATTCCCAAAGCTCTCATGCCTCTTGAGATATCTGGTCCAACTGTTGGAGAAGTAAGAACAGTATCAGACATGCATGAGCGTAAAGCAGCTATGGCAAGTGAGGCTGACGCCTTTATTGCTCTTCCTGGTGGATATGGAACGATGGAAGAACTATTGGAAATGATAACATGGGCTCAACTTGGAATCCACACGAAGCCCGTTGGGCTGCTTAATGTAGATGGGTATTATAATTGCTTGCTGGCATTGTTTGACAATGGCGTTGAAGAAGGCTTCATCAAGCCCAGTGCTCGGCACATCGTCATCTCGGCTCCCACGGCCAAAGAACTTATACTGAAACTCGAGCAATACACTCCTATCCACAACCATGTGGCTCCTCATGAAAGCTGGAAGATGGAGCGGCTCGGGAATTATCCGAGTCAAGAAAATTCACGCTGA 651 47.16 MEEDGGRSQFRRICVFCGSNSGHRKVFSDATLELGNELVKRRIDLVYGGGSVGLMGLISQRVYDGGCHVLGVIPKALMPLEISGPTVGEVRTVSDMHERKAAMASEADAFIALPGGYGTMEELLEMITWAQLGIHTKPVGLLNVDGYYNCLLALFDNGVEEGFIKPSARHIVISAPTAKELILKLEQYTPIHNHVAPHESWKMERLGNYPSQENSR 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2942897 2944801 - BLOR08766 Blo18g00278 73582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00278 216 TIGRFAM TIGR00730: TIGR00730 family protein 12 188 IPR005269 GO:0009691|GO:0016787
Blo18g00278 216 Gene3D - 10 203 - -
Blo18g00278 216 PANTHER LOG FAMILY PROTEIN YJL055W 8 206 - -
Blo18g00278 216 SUPERFAMILY MCP/YpsA-like 10 188 - -
Blo18g00278 216 Pfam Possible lysine decarboxylase 55 183 IPR031100 -
Blo18g00278 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 8 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00278 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - qsu:111990251 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00278 Blo-Chr18:2942897 Blo18g00781 Blo-Chr18:22474993 4.99E-95 dispersed
Blo18g00278 Blo-Chr18:2942897 Blo01g01168 Blo-Chr1:42841547 2.52E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g81 . . . . . . . . . . Cma01g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00278 Bda01g01332 . . . Bma01g00920 . . . . . . . . . Cpe02g00268 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006617 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00278 Blo_Chr18 FPKM 27.812773 23.869238 64.609207 60.424435 23.60088 28.353428 24.600721 34.996391 38.782627 38.224888