Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00290 ATGGAGGGCGAGGAGAATATACTGGAGACCATTTATGAAGAGGTTAATGTGGAAGATGATGACGTGGATATGATTGATGTGGAAGGCGAGTTTGTGGATAAGGATTTGAACGGCATTTCAGAAAAGAGCAATGATACACATCCCAGTGACTTGAACAAAGAATCTATAAGTAAAAATCAAAGGCGTCGTGCAAACAAGAAGAAAAACAAGAAAAAAAATAGTGGGGTTGGGACAAATGTGACAGATATAAACAGATTTGTGTTAGATTCATGTAAGCGACTAAAAGAGAAGAAATCATACATGGTATATACTGCTGTAGGTTGCCTGGGAATTTCTGCATTAAGTGATCTCATTAAAGAGGTGGATGCTATTCAGGCTTGCGGCGGTCAGATGACTGCTGATGGCAGGCGCTCTCGAACAGGGGGTGGTGTTTTGTGGAACATAATCAAAGCACGAGAACCAAACGCATATAAGGAGATAATGCAAAAGGCAAAGGATTTTGAGAAATTATTTAAGCAGCCAAATGTTAGGCAATCTACACGTACTGGAATGGAGCATCCTAAAGAAGTTCCTCCACATGTATTTAGTGGTCAGGCTCCTGCTGTTGCAGAAGCCTCTCCTCTAACTTCACTTGCAAACCAACATAAGCAGTCAGATTCTGAAGGGAAACGTGCACCTGTCCATGAAAGAGCAATTTCGCCGCCAGATTGTACGCTTTCAGTCACCACTTTTCAGATTTGGCTGGTTGAAAATTTTATCGAAATGGAAAGTTTTCTTTGGTGGAGAAGACATGGATTGTCGTTGAAGATGGAAACTATTTTCTTTGGTGCTGCCTCCCCCACTGCTTCTGCTACTGCCTCATCGATACCTGCTGTCAGCCATGGTTGCCATTTGGTTGTGGCTTACCACATCCCACACTCATTTCTGCAGCCATTATTCAACCATTTCATTTTGTTGTTCTTCGTCGCCATGATCGAGTCATTGACATATAACAATATTGTCGAATTAGATATAAGTTCCGGAAAGGTGACTTACAGTGAGAATTGA 1047 41.74 MEGEENILETIYEEVNVEDDDVDMIDVEGEFVDKDLNGISEKSNDTHPSDLNKESISKNQRRRANKKKNKKKNSGVGTNVTDINRFVLDSCKRLKEKKSYMVYTAVGCLGISALSDLIKEVDAIQACGGQMTADGRRSRTGGGVLWNIIKAREPNAYKEIMQKAKDFEKLFKQPNVRQSTRTGMEHPKEVPPHVFSGQAPAVAEASPLTSLANQHKQSDSEGKRAPVHERAISPPDCTLSVTTFQIWLVENFIEMESFLWWRRHGLSLKMETIFFGAASPTASATASSIPAVSHGCHLVVAYHIPHSFLQPLFNHFILLFFVAMIESLTYNNIVELDISSGKVTYSEN 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3057043 3060430 - BLOR08778 Blo18g00290 73594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00290 348 MobiDBLite consensus disorder prediction 36 59 - -
Blo18g00290 348 Pfam Phosphorylated adapter RNA export protein, RNA-binding domain 89 165 IPR019385 -
Blo18g00290 348 PANTHER CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 1 233 IPR039047 GO:0006408
Blo18g00290 348 Gene3D - 78 175 IPR038092 -
Blo18g00290 348 MobiDBLite consensus disorder prediction 206 227 - -
Blo18g00290 348 MobiDBLite consensus disorder prediction 36 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00290 K14291 PHAX; phosphorylated adapter RNA export protein - zju:107419382 238.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g54 . . . . Bpe02g01535 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00290 . . . . Bma01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008032 0 0 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00290 Blo_Chr18 FPKM 7.06384 7.450484 0.155217 0.084067 0.0 0.134046 0.149102 0.412864 0.437194 0.380783