Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00400 ATGGAGGTTCTGTTCAGAAAGTCGCCGCCGACAATGGTGGCGATTGCGGTTGCGGTGTGTGTTTTAGGGATGATGGTGCCAGAAGTTTCAGGCACTCGGTGGACTGTAGGGAGTAACATGGGTTGGACCACCGGTGTTAACTACACTATTTGGGCTCAAGATAAGCACTTCTACAATAGCGACTGGCTCTTCTTTGTTTACGACCGGAATCAAATGAACGTTCTAGAGGTGAACCAAACGGACTACGAGGCCTGCAATTCCGATCACCCGAAACATAATTGGACAACGGGTGCCGGAAGAGATGTCGTCCCGCTCAACGTGACCAGGCCCTACTATTTCATCAGCGGCAAAGGTTTCTGCTATGGAGGTATGAAGCTGGCTATTAACGTTGAGAATTTACCTCCTCCTCCATCCTCTTCGCCATTGGATCAGAAGAACTCTGCTCCGACTCTAACTTACGGATTGACCCGTCTTCTTCTTCCCGTGGCTGTAGCGGTCGGAGTCTTTTGGGAAGCTCTTTTCCGGCTCCGGTAG 534 50.75 MEVLFRKSPPTMVAIAVAVCVLGMMVPEVSGTRWTVGSNMGWTTGVNYTIWAQDKHFYNSDWLFFVYDRNQMNVLEVNQTDYEACNSDHPKHNWTTGAGRDVVPLNVTRPYYFISGKGFCYGGMKLAINVENLPPPPSSSPLDQKNSAPTLTYGLTRLLLPVAVAVGVFWEALFRLR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4282481 4283678 - BLOR08888 Blo18g00400 73704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00400 177 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055
Blo18g00400 177 Gene3D - 31 133 IPR008972 -
Blo18g00400 177 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Blo18g00400 177 PANTHER LAMIN-LIKE PROTEIN 12 167 - -
Blo18g00400 177 PANTHER BLUE COPPER PROTEIN 12 167 IPR039391 GO:0009055
Blo18g00400 177 SUPERFAMILY Cupredoxins 31 130 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00400 - - - pop:7496000 254.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00375 Blo18g00400 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00375 Blo-Chr17:4171405 Blo18g00400 Blo-Chr18:4282481 8.77E-85 dispersed
Blo18g00400 Blo-Chr18:4282481 Blo07g00213 Blo-Chr7:2706591 1.63E-15 dispersed
Blo10g00507 Blo-Chr10:11266716 Blo18g00400 Blo-Chr18:4282481 9.55E-29 transposed
Blo17g00374 Blo-Chr17:4139278 Blo18g00400 Blo-Chr18:4282481 3.78E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00400 Blo_Chr18 FPKM 2.222404 1.813339 3.122326 4.295431 7.277888 7.136503 7.102932 5.699871 4.931881 4.994964