Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00408 ATGGGTAAGTTCATCTTCAATGTCGTTAAGGGTTTGGCTCTGTCCTTGGCCTTTCTGGTTCAAGCAATGGCGGGCAAGAACGCCATTGTTGGTCAGGGAGTAGGACGAAGTGAATGGACGGACGCCCATGCAACTTTCTATGGCGACGAGACAGGAGGAGAAACCATGCAGGGAGCTTGTGGATATGGCGATCTGTTCAAGCAAGGATACGGGCTAGAAACGGCGGCGCTGAGCACAGCTCTGTTCAACGACGGCGCCCTTTGCGGTGCATGCTTTGAGTTAATGTGCGTGAACGATCCACAGTGGTGCGTACCCAATGCCGGGACGATCAAAATAACAGCCACCAATTTCTGCCCACCGGATTACAGCAAGACCCACGATATTTGGTGCAATCCACCGCAAAAACACTTCGATCTCTCGGAGCCCATGTTCCTCAAGATTGCTTACTACAAAGCCGGAATCGTTCCGGTCCAGTTCCGGCGAGTTCCTTGTCACAAATCGGGAGGTGTAAAGTTTGAGATCAAAGGAAATCCTAATTGGAATCTTGTTTTGGTGTATAATGTGGGTGGATCAGGCGACGTTACGGGTGTAAAGATCAAGGGGGAGAAGACTGGTTGGATTCAAATGTCGAGGAACTGGGGGATGAATTGGCAGACCGGGCACTATTTGGTCGGGCAAAGGTTGTCGTTTCAAGTGACTATCAGTGATGGGAGAACGATTGAGGCTTATAATGTTGCGCCATGGAATTGGCAGTTTGGGCAGAGCTTTGAGGGAAGTAAAAATTTCTAG 789 49.81 MGKFIFNVVKGLALSLAFLVQAMAGKNAIVGQGVGRSEWTDAHATFYGDETGGETMQGACGYGDLFKQGYGLETAALSTALFNDGALCGACFELMCVNDPQWCVPNAGTIKITATNFCPPDYSKTHDIWCNPPQKHFDLSEPMFLKIAYYKAGIVPVQFRRVPCHKSGGVKFEIKGNPNWNLVLVYNVGGSGDVTGVKIKGEKTGWIQMSRNWGMNWQTGHYLVGQRLSFQVTISDGRTIEAYNVAPWNWQFGQSFEGSKNF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4373156 4374023 + BLOR08896 Blo18g00408 73712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00408 262 SMART dpbb_1 74 159 IPR007112 -
Blo18g00408 262 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Blo18g00408 262 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Blo18g00408 262 Gene3D - 168 262 IPR036749 -
Blo18g00408 262 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Blo18g00408 262 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Blo18g00408 262 PANTHER EXPANSIN-A15 13 262 IPR002963 GO:0009664
Blo18g00408 262 SUPERFAMILY Barwin-like endoglucanases 38 187 IPR036908 -
Blo18g00408 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Blo18g00408 262 Gene3D - 26 165 IPR036908 -
Blo18g00408 262 Pfam Lytic transglycolase 74 159 IPR009009 -
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Blo18g00408 262 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Blo18g00408 262 PANTHER EXPANSIN 13 262 - -
Blo18g00408 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 169 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00560 Blo-Chr11:5291861 Blo18g00408 Blo-Chr18:4373156 6.65E-111 dispersed
Blo11g00561 Blo-Chr11:5295233 Blo18g00408 Blo-Chr18:4373156 1.67E-108 dispersed
Blo18g00408 Blo-Chr18:4373156 Blo04g00187 Blo-Chr4:1518644 5.51E-106 dispersed
Blo18g00408 Blo-Chr18:4373156 Blo13g00832 Blo-Chr13:31013777 3.65E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00408 - - cit:102617104 383.259