Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00414 ATGGGGAGAGGAAGAGTTGAACTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACATTTGCAAAGAGGAGAAACGGGCTTTTTAAGAAAGCCTATGAGCTTTCCGTTCTCTGTGATGCTGAGGTTGCGCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCACCTCTAACATGCTTAGAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCTGTGGAAGTCAACAGACCATGCAAGGAGCTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGCTAAAATCCAGATTTGAGTCCCTACAAAGAACTCAAAGAAATCTGCTTGGAGAAGAATTGGGTCCATTGAACTCGAAAGAGCTTGAACAGCTTGAGCATCAACTGGAGGCATCCCTAAAGCAAGTCAGATCCACCAAGACCCAGTACATGCTTGATCAGCTTTCTGATCTTCAAACCAAGGAACAAATGCTGATTGAAGCTAACAGAGCTTTGACTATAAAGCTGGATGAAATCAGCTCGAGAAATCACCTCAGGCAAGCTTGGGAAGCTGGGGAGCAAAACATGTCATATGGCCCGCAGAATGCTGCTCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATGCCACTTTGCAAATTGGATACAGTGGAGCTGATGAGATGGCGGCAACTGGATCAGCCCACGGCCAGCAAGTCACCGGTTTCATACCTGGATGGATGCTCTGA 738 46.07 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLRTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLEHQLEASLKQVRSTKTQYMLDQLSDLQTKEQMLIEANRALTIKLDEISSRNHLRQAWEAGEQNMSYGPQNAAQTQGFFQPLDCNATLQIGYSGADEMAATGSAHGQQVTGFIPGWML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4509735 4512985 + BLOR08902 Blo18g00414 73718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00414 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo18g00414 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Blo18g00414 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Blo18g00414 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo18g00414 245 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Blo18g00414 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Blo18g00414 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 Coils Coil 122 145 - -
Blo18g00414 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Blo18g00414 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00140 Blo-Chr1:1906764 Blo18g00414 Blo-Chr18:4509735 1.70E-61 dispersed
Blo02g00195 Blo-Chr2:1761044 Blo18g00414 Blo-Chr18:4509735 4.71E-100 dispersed
Blo07g00016 Blo-Chr7:341868 Blo18g00414 Blo-Chr18:4509735 2.78E-99 dispersed
Blo11g00805 Blo-Chr11:12765549 Blo18g00414 Blo-Chr18:4509735 1.20E-50 dispersed
Blo15g00152 Blo-Chr15:1517856 Blo18g00414 Blo-Chr18:4509735 1.38E-39 dispersed
Blo18g00414 Blo-Chr18:4509735 Blo01g00461 Blo-Chr1:5098214 3.51E-44 dispersed
Blo11g00324 Blo-Chr11:2653451 Blo18g00414 Blo-Chr18:4509735 6.15E-135 wgd
Blo17g00396 Blo-Chr17:4438325 Blo18g00414 Blo-Chr18:4509735 1.31E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13589 PF01486 K-box 1.10E-26 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00414 K09264 - jre:108989428 405.216