Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo18g00416 | ATGCATGGCATTTCTTCATCAGTTCCAGGTGCAGCATCTATGGCTTCTCCAGCATCATATGACAACTCTATGCCCGATATGTATCATTCTCCTCCAAGGCCGTTGCCGTATGATGTTGACCCGAGATATATCCGCTTACAGCGTGATGGACTAGTTTCGAGGCGTGACAAGGGCTCAAGTCACCTTCATGAAGAAACAGAACCTCTGAGAAGTGATGTTGATAGGGCCGAAGAATTGTTAAGTGGAGTGGACAAATTGGATTCTGAAGACGAATCTAAAGAGCACATTTATAAGTCCTCTCTTAAGATCTCTTCAGTAAAAGCTACAATTGCAGCTGAAAATGTTTATATGCCATCTGAAGATGAGGATGTTTGTCCAACATGCCTGGAAGAATATACACGAGAGAATCCGAAGATAACAACCAAATGTGCCCATCATTTCCACCTCGGGTGCATCTACGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTTTGTGGCAAGGTACCCTCCTTTTCTCCCCTCAGTTCTCTTGCTATCAACTTTGCTTATCTCAATATTCAAGTATGGTACCTCTTGATGAGTTTTCTGTGTGAGTAG | 597 | 43.72 | MHGISSSVPGAASMASPASYDNSMPDMYHSPPRPLPYDVDPRYIRLQRDGLVSRRDKGSSHLHEETEPLRSDVDRAEELLSGVDKLDSEDESKEHIYKSSLKISSVKATIAAENVYMPSEDEDVCPTCLEEYTRENPKITTKCAHHFHLGCIYEWMERSDSCPVCGKVPSFSPLSSLAINFAYLNIQVWYLLMSFLCE | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 4519272 | 4520525 | - | BLOR08904 | Blo18g00416 | 73720 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo18g00416 | 198 | MobiDBLite | consensus disorder prediction | 42 | 73 | - | - | |
| Blo18g00416 | 198 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 188 | IPR013083 | - | |
| Blo18g00416 | 198 | SUPERFAMILY | RING/U-box | 119 | 170 | - | - | |
| Blo18g00416 | 198 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Blo18g00416 | 198 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 165 | IPR001841 | - | |
| Blo18g00416 | 198 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Blo18g00416 | 198 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 170 | - | - | |
| Blo18g00416 | 198 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 170 | - | - | |
| Blo18g00416 | 198 | SMART | ring_2 | 125 | 165 | IPR001841 | - | |
| Blo18g00416 | 198 | Pfam | Ring finger domain | 124 | 165 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo03g00342 | Blo-Chr3:7392899 | Blo18g00416 | Blo-Chr18:4519272 | 3.09E-26 | dispersed | |
| Blo12g00545 | Blo-Chr12:23416809 | Blo18g00416 | Blo-Chr18:4519272 | 7.59E-10 | dispersed | |
| Blo18g00416 | Blo-Chr18:4519272 | Blo19g00373 | Blo-Chr19:23647831 | 4.56E-10 | dispersed | |
| Blo10g00170 | Blo-Chr10:2033065 | Blo18g00416 | Blo-Chr18:4519272 | 2.34E-40 | wgd | |
| Blo11g00325 | Blo-Chr11:2658313 | Blo18g00416 | Blo-Chr18:4519272 | 3.40E-77 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo18g00416 | - | - | zju:107416681 | 256.914 |