Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00475 ATGACCAATCCAGAGGCAGAGGAGAGAGAGTACGAAGTGGAGGAAATGAGAGAGAGGATAAAGTCTTCGAGAGGAAGCCGATTTAATCTGATAGAGAACGAGTTGAGGACGGAGTCGACGCAAAGAAAGTTTTGCCGCGAGAGCTTCATCAATGGCATCCAGGACCTCTCCACTGGCCTCGTTATCCACCCTGAAAACAGGTGGTACTCGGCGTGGATCAACTTCATACTGATATGGGCAGTTTACTCGTCTTTCTTTACGCCAATGGAGTTTGGATTCTTCAGGGGACTGCCTGAGAATCTCTTCATTCTTGACATTGCTGGACAGATTACCTTTTTCCTTGACATCGTTCTTCAGTTCTTTGTTGCTTACAGAGACAGTCAGACCTATATTATGATTCACAAACGTACCCCTATTGCTCTCCGGTCCGTCTTCTCTTTCCCCTCTCTATTTCTGCCTCAATACACCATTTTTCATGTTTGTCAACTCTTCAGGTACTTGAAATCTGGGTTTGTGATTGATTTTCTTGGATGCATGCCTTGGGACATCATTTACAAGGCTAGCGGGAGAAGAGAGGAAGTAAGGTATCTTTTATGGATCAGATTAAGTAGGGTGCGAAAAGTCACTGATTTCTTTCGGAATATGGAGAGGAACATACGTATAAACTACATGTTCACTAGGATTGTCAAGCTTATTGTTGTTGAACTCTATTGCACACATACAGCTGCCTGCATCTTTTACTATTTGGCTACAACTCTTCCATCTTCTGAAGAAGGATACACCTGGATAGGAAGCCTAAAGTTGGGAGACTACAGTTACTCAAATTTCAGAGATATTGATATATGGAAACGCTATATAACATCCTTATATTTTGCCATAGTAACCATGGCCACAGTCGGTTATGGTGAGATACATGCAGTTAATATGAGGGAAATGATATTTGTAATGATATATGTCTCTTTTGACATGATTCTTGGGGCTTATTTGATTGGTAACATGACAGCCTTGATTGTTAAAGGTTCAAAAACTGAAAAGTTCAGAGATAAAATGACGGATCTCATCAAATACATGAATCGAAACAGGCTTGGAAGAGACATCCGTAATCAGATTAAAGGTCATGTACGTTTACAGTACGAGAGTAGCTACACCGAAGCTTCTGTTCTTCAGGACATCCCCATTTCTATCCGCGCTAAGATTTCACAAACATTATACTTGCCTTACATTGAGAATGTTTCTCTCTTCAAGGGATGCTCAACCGAGTTCATCAATCAAATAGTTTTAAGACTCCACGAAGAGTTTTTTCTCCCTGGAGAAGTGATACTGGAACAGGGAAATGTCGTAGATCAACTTTATTTTATCTGTCATGGTAAATTGGAGGAACTGGGCATAGGAGAAGATGGATCAGAAGAAACTATTTCAGTACTAGAACCCAACAACTTATTTGGAGAGATTTCTATTCTTTGCAATATTCCTCAACCCTATGCAGTTCGCGTCAGTGAATTATGTCGGCTTCTGAGGCTTGACAAGCAGTCTTTTATGAATATTCTTGATATATACTTTTACGATGGCCGGAAAATCTTGAGCAATCTTCTAGAAGGAAAAGAATCTAGTCTCCGAGTCAAGCAGTTGGAATCAGATATTACATTTCACATTGGAAAGCAAGAAGCAGAACTTGCTTTAAAGGTGAATAGTGCAGCTTACCATGGAGATTTGTACCAGCTCAAAGGTTTGATCCGAGCAGGAGCCAATCCGAACAAGAAAGATTACGACGGAAGGTCACCATTGCACCTTGCAGCATCAAGAGGGTATGAAGATATTGCAATTTTTCTCATTCAGGAAGGAGTAGACACCAACATAATAGATAAATTTGGAACCACGCCCTTACTTGAAGCCATAAAATATGGGCACGATCGAATTGTGGCTTTACTTGTCCAACAAGGTGCTTCTTTAAAGATAGAAGAAGCTGGGACCTTTCTTTGTACAGCCGTTGCAAGGGGGGATTCAGATTTCCTTAAAAGAGTGTTGGCCAATGGAATAGACCCAAACTCAAAAGATTATGATTATCGAACTCCGCTCCATGTGGCGGCTTCTGAAGGATTGTATCCGATGGCTAAGCTGCTGATAGAAGCTGGGGCCAGTGTCTTTTCAAAAGACAGATGGGGAAATACCCCTCTAGATGAGGCCAGGACGGTTGGAAACATGAACTTGATCAAACTATTGGAAGAAGAGAAGACCTTTCAGCTCTCTCCATCATCATCCTCTCATCAAACCCAAGAAGTCACTGATAAGAAGCATTCAAGACAATGCACTGTGTTCCCTTTCCACCCTTGGGATCCTAAAGAAAATAGAAGATCGGGGATTGTGTTATGGGTTCCACAAACCATTCAAGAGCTTATTGAAGCAGCCATCGAGCAGCTTGAGCTTAAGAGCGGGACTTGTCTATTAACAGAAGATGGGGGTAAAATTCTTGATGTTGACATGATTAATGACAATCAAAAGCTGTATCTAGGCAATGAAACAAATTAG 2526 41.29 MTNPEAEEREYEVEEMRERIKSSRGSRFNLIENELRTESTQRKFCRESFINGIQDLSTGLVIHPENRWYSAWINFILIWAVYSSFFTPMEFGFFRGLPENLFILDIAGQITFFLDIVLQFFVAYRDSQTYIMIHKRTPIALRSVFSFPSLFLPQYTIFHVCQLFRYLKSGFVIDFLGCMPWDIIYKASGRREEVRYLLWIRLSRVRKVTDFFRNMERNIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPSSEEGYTWIGSLKLGDYSYSNFRDIDIWKRYITSLYFAIVTMATVGYGEIHAVNMREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGRDIRNQIKGHVRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIENVSLFKGCSTEFINQIVLRLHEEFFLPGEVILEQGNVVDQLYFICHGKLEELGIGEDGSEETISVLEPNNLFGEISILCNIPQPYAVRVSELCRLLRLDKQSFMNILDIYFYDGRKILSNLLEGKESSLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLIRAGANPNKKDYDGRSPLHLAASRGYEDIAIFLIQEGVDTNIIDKFGTTPLLEAIKYGHDRIVALLVQQGASLKIEEAGTFLCTAVARGDSDFLKRVLANGIDPNSKDYDYRTPLHVAASEGLYPMAKLLIEAGASVFSKDRWGNTPLDEARTVGNMNLIKLLEEEKTFQLSPSSSSHQTQEVTDKKHSRQCTVFPFHPWDPKENRRSGIVLWVPQTIQELIEAAIEQLELKSGTCLLTEDGGKILDVDMINDNQKLYLGNETN 841
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 5596545 5602912 + BLOR08963 Blo18g00475 73779
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00475 841 ProSiteProfiles Ankyrin repeat region circular profile. 590 622 - -
Blo18g00475 841 ProSiteProfiles KHA domain profile. 768 841 IPR021789 -
Blo18g00475 841 ProSiteProfiles Ankyrin repeat profile. 623 655 IPR002110 GO:0005515
Blo18g00475 841 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Blo18g00475 841 Gene3D - 547 655 IPR036770 -
Blo18g00475 841 Pfam KHA, dimerisation domain of potassium ion channel 768 836 IPR021789 -
Blo18g00475 841 PRINTS Ankyrin repeat signature 703 717 IPR002110 GO:0005515
Blo18g00475 841 PRINTS Ankyrin repeat signature 591 606 IPR002110 GO:0005515
Blo18g00475 841 ProSiteProfiles cAMP/cGMP binding motif profile. 413 533 IPR000595 -
Blo18g00475 841 ProSiteProfiles Ankyrin repeat region circular profile. 623 654 - -
Blo18g00475 841 Pfam Cyclic nucleotide-binding domain 433 517 IPR000595 -
Blo18g00475 841 PANTHER POTASSIUM CHANNEL SKOR-LIKE 164 840 - -
Blo18g00475 841 SMART ANK_2a 720 752 IPR002110 GO:0005515
Blo18g00475 841 SMART ANK_2a 687 716 IPR002110 GO:0005515
Blo18g00475 841 SMART ANK_2a 654 683 IPR002110 GO:0005515
Blo18g00475 841 SMART ANK_2a 623 652 IPR002110 GO:0005515
Blo18g00475 841 SMART ANK_2a 590 619 IPR002110 GO:0005515
Blo18g00475 841 CDD CAP_ED 413 527 IPR000595 -
Blo18g00475 841 SUPERFAMILY Ankyrin repeat 563 741 IPR036770 -
Blo18g00475 841 PANTHER POTASSIUM CHANNEL AKT1 7 146 IPR045319 GO:0005249|GO:0006813
Blo18g00475 841 PANTHER POTASSIUM CHANNEL AKT1 164 840 IPR045319 GO:0005249|GO:0006813
Blo18g00475 841 SUPERFAMILY Voltage-gated potassium channels 64 338 - -
Blo18g00475 841 PRINTS EAG/ELK/ERG potassium channel family signature 329 338 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo18g00475 841 PRINTS EAG/ELK/ERG potassium channel family signature 237 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo18g00475 841 PRINTS EAG/ELK/ERG potassium channel family signature 105 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo18g00475 841 PRINTS EAG/ELK/ERG potassium channel family signature 285 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo18g00475 841 Pfam Ion transport protein 70 338 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Blo18g00475 841 Pfam Ankyrin repeats (many copies) 675 728 IPR002110 GO:0005515
Blo18g00475 841 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Blo18g00475 841 Pfam Ankyrin repeats (3 copies) 565 652 IPR002110 GO:0005515
Blo18g00475 841 Gene3D - 656 749 IPR036770 -
Blo18g00475 841 Gene3D Jelly Rolls 397 535 IPR014710 -
Blo18g00475 841 Gene3D - 71 339 - -
Blo18g00475 841 SMART cnmp_10 413 531 IPR000595 -
Blo18g00475 841 Gene3D Helix hairpin bin 340 396 - -
Blo18g00475 841 ProSiteProfiles Ankyrin repeat region circular profile. 687 719 - -
Blo18g00475 841 PANTHER POTASSIUM CHANNEL SKOR-LIKE 7 146 - -
Blo18g00475 841 SUPERFAMILY cAMP-binding domain-like 341 530 IPR018490 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00475 Blo-Chr18:5596545 Blo12g01092 Blo-Chr12:28596716 8.56E-77 dispersed
Blo11g00625 Blo-Chr11:6414502 Blo18g00475 Blo-Chr18:5596545 1.64E-11 transposed
Blo17g00470 Blo-Chr17:6596870 Blo18g00475 Blo-Chr18:5596545 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00475 K21867 - gmx:100797927 1305.04