Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00496 ATGGCGTCTTCGTCTAATTCCCCTTGTGCAGCCTGCAAGTTTCTCCGCCGGAAATGTCAACCGGAGTGCGTTTTCGCGCCGTACTTTCCACCAGACCAACCCCAAAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCAAGCAACGTCACCAAGCTCCTCAACGAGCTCCACCCTCACCAGCGAGAAGACGCCGTCAACTCCCTTGCCTACGAGGCCGATATGCGTCTGAGAGACCCAGTCTATGGGTGCGTCGGCGTCATCTCCCTCCTCCAGCACCAGCTTCGCCAGCTTCAGATTGACCTCAGCAGCGCAAAATCTGAGCTCTCAAAATACCAAAACCTGGGTCTGGCCGGCCATGGCCTCATCGCAGCTGCCGCTGCCGCTGCCACTACGACTCATAACCACCATCTCCAGAACCTCGGAATCAACCTGATTGGCTCCGGGAAAGATTACCATCACCACCACCAGTTATTCCCTCGCGATCAGGCCCAGCCGATCATGAGGGGCTTCGACATTGCCGGAAACAGTGTCTATGACGGCGGCCTCCTTGCAATGAACGTCTCCGCAAGTTTAGGTCAACTCAGCCAGTTTCAGCAACCGAGGGCTGCCGGAGGCGATGATAACCGCAGAACAATCGATCCTTCT 645 56.74 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSSAKSELSKYQNLGLAGHGLIAAAAAAATTTHNHHLQNLGINLIGSGKDYHHHHQLFPRDQAQPIMRGFDIAGNSVYDGGLLAMNVSASLGQLSQFQQPRAAGGDDNRRTIDPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6148715 6149359 - BLOR08984 Blo18g00496 73800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00496 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 181 - -
Blo18g00496 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Blo18g00496 215 Coils Coil 87 114 - -
Blo18g00496 215 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Blo18g00496 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00219 Blo-Chr16:4932956 Blo18g00496 Blo-Chr18:6148715 2.02E-53 dispersed
Blo18g00496 Blo-Chr18:6148715 Blo04g00218 Blo-Chr4:1690897 3.47E-48 dispersed
Blo04g01033 Blo-Chr4:13965454 Blo18g00496 Blo-Chr18:6148715 7.17E-49 transposed
Blo11g00391 Blo-Chr11:3362647 Blo18g00496 Blo-Chr18:6148715 3.22E-71 wgd
Blo17g00504 Blo-Chr17:7740135 Blo18g00496 Blo-Chr18:6148715 1.80E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13598 PF03195 LOB 2.40E-43 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00496 - - rcu:8263444 338.576