Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00504 ATGGATTCGGAGGAGGAGGAGGAGTTCGATATGCATGACGCTCACGATGTTGATGATCAGTCCGTCGATAACGAGGATTTCTATAGCGATGGTGATGACGATACAGCTGCAATCGACAGTGACGATGCTGATTTGGTTGATTACGAGTTCATTGATAATGATTCGGATGATTCCGAAGGTGTTATCTCGCATCGGCACCAGCTAGCTTGTGGCATTTGTTTTGAAACCTATCCTTGTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAATTCGTGCTGGACAGATTATATTAGTACATCTATCAATGATGGTCCTGGATGTCTGATGTTACGATGTCCCGAGCCATCCTGTGTTGCTGCTGTTGGCCAAGATATGATTAGTATGCTGGCTTCAGATGAAGACCAGGAGAAGTATTTTCGTTACTTTGTTAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGCCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGTGGAACCTTTGATGTGACATGCCGCTGCTCTTATGGATTTTGCTGGAATTGTACAGAAGAGGCTCATCGCCCTGTTGATTGTGGTACTGTGGGCCGATGGATATTGAAGAACAGTGCAGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAGCCTTGTCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGTATGCACATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGTTGGCTTTGCCTTGGGACATGGGCAGAACATGGTGAGCGAACTGGTGGATTTTATGCGTGCAACCGTTACGAAACTGCAAAACAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGAGAAATGGCCAAGAACTCTCTTGAGAGATATACTCATTACTATGAAAGATGGGCTACAAACCAATTGTCCAGGCAAAAAGCACTTTCAGATCTCCATCAAATGCAAAATGTGCATCTCGAGAAGCTGAGCGACGTCCAGTGCCAACCTGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGACGGGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACACGCAAAGAGACGCTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCGGGGTTGGAACGGCTTCATCAATGTGTGGAAAAGGAGCTTCAAGTTTATCTCAATGCAGAAGGACCATCGAAAGATTTTAATGATTTCCGCACTAAACTTGCTGGACTAACTAGCGTAACTAGGAACTACTTCGAGAATCTCGTCCGAGCACTTGAAAATGGACTATCAGATGTGAACTCTCATGGTGCTTGCAGCCAAACAGCAAGCATGAAGAACATAGGAGCTGGCAGTAGCAGGGGTAGAGGCAGTAAGAGCAAAGGTTCCGTGTCTAGATCAAGTGGTTCAAGTCGAACAATCGACAATTCTGATCTTTGA 1497 44.02 MDSEEEEEFDMHDAHDVDDQSVDNEDFYSDGDDDTAAIDSDDADLVDYEFIDNDSDDSEGVISHRHQLACGICFETYPCDRICAASCGHPFCNSCWTDYISTSINDGPGCLMLRCPEPSCVAAVGQDMISMLASDEDQEKYFRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGTFDVTCRCSYGFCWNCTEEAHRPVDCGTVGRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGTWAEHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQLSRQKALSDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSQTASMKNIGAGSSRGRGSKSKGSVSRSSGSSRTIDNSDL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6355363 6365057 - BLOR08992 Blo18g00504 73808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00504 498 Pfam IBR domain, a half RING-finger domain 218 266 IPR002867 -
Blo18g00504 498 Pfam IBR domain, a half RING-finger domain 139 201 IPR002867 -
Blo18g00504 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Blo18g00504 498 ProSiteProfiles TRIAD supradomain profile. 66 279 IPR044066 -
Blo18g00504 498 Coils Coil 287 307 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 139 208 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 220 268 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 23 39 - -
Blo18g00504 498 Pfam Ariadne domain 288 451 IPR045840 -
Blo18g00504 498 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 462 IPR031127 GO:0004842|GO:0016567
Blo18g00504 498 CDD RING-HC_RBR_TRIAD1_like 70 120 - -
Blo18g00504 498 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
Blo18g00504 498 Gene3D - 197 452 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 66 151 - -
Blo18g00504 498 SMART ibrneu5 214 275 IPR002867 -
Blo18g00504 498 SMART ibrneu5 139 201 IPR002867 -
Blo18g00504 498 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 67 462 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 464 498 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00504 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - tcc:18599238 810.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00201 Blo-Chr1:2657711 Blo18g00504 Blo-Chr18:6355363 0 dispersed
Blo03g00874 Blo-Chr3:34559841 Blo18g00504 Blo-Chr18:6355363 1.51E-12 dispersed
Blo15g00712 Blo-Chr15:23101189 Blo18g00504 Blo-Chr18:6355363 5.02E-42 dispersed
Blo18g00504 Blo-Chr18:6355363 Blo04g01135 Blo-Chr4:18587297 2.28E-11 dispersed
Blo17g00514 Blo-Chr17:8162243 Blo18g00504 Blo-Chr18:6355363 1.52E-23 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00712 BCT 107 478 ARIADNE family AT4G34370 62.1 2.1e-147 519.2
Blo15g00712 BCT 1 434 ARIADNE family AT2G16090 66.7 1.9e-189 659.1
Blo15g00712 BCT 1 412 ARIADNE family AT3G27710 57.7 1.3e-154 543.5
Blo17g00514 . 9 545 ARIADNE family AT1G05890 63.5 1.8e-218 755.7
Blo01g00201 . 196 671 ARIADNE family AT1G05890 71.7 6.4e-216 747.3
Blo18g00504 . 67 465 ARIADNE family AT1G05890 74.9 3.8e-192 668.3
Blo17g00514 . 18 540 ARIADNE family AT1G65430 78.2 8.2e-253 869.8
Blo01g00201 . 183 724 ARIADNE family AT1G65430 68.0 1.5e-230 795.8
Blo18g00504 . 67 468 ARIADNE family AT1G65430 81.1 5.6e-209 724.2
Blo17g00514 . 11 453 ARIADNE family AT2G31780 53.6 1.7e-144 509.6
Blo01g00201 . 139 587 ARIADNE family AT2G31780 55.9 5.4e-143 504.6
Blo18g00504 . 68 384 ARIADNE family AT2G31780 58.2 7.1e-119 424.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00504 Blo_Chr18 FPKM 3.310392 3.74666 0.112948 0.143194 1.388315 1.50348 1.219332 0.0 0.0 0.0