Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo18g00504 | ATGGATTCGGAGGAGGAGGAGGAGTTCGATATGCATGACGCTCACGATGTTGATGATCAGTCCGTCGATAACGAGGATTTCTATAGCGATGGTGATGACGATACAGCTGCAATCGACAGTGACGATGCTGATTTGGTTGATTACGAGTTCATTGATAATGATTCGGATGATTCCGAAGGTGTTATCTCGCATCGGCACCAGCTAGCTTGTGGCATTTGTTTTGAAACCTATCCTTGTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAATTCGTGCTGGACAGATTATATTAGTACATCTATCAATGATGGTCCTGGATGTCTGATGTTACGATGTCCCGAGCCATCCTGTGTTGCTGCTGTTGGCCAAGATATGATTAGTATGCTGGCTTCAGATGAAGACCAGGAGAAGTATTTTCGTTACTTTGTTAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGCCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGTGGAACCTTTGATGTGACATGCCGCTGCTCTTATGGATTTTGCTGGAATTGTACAGAAGAGGCTCATCGCCCTGTTGATTGTGGTACTGTGGGCCGATGGATATTGAAGAACAGTGCAGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAGCCTTGTCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGTATGCACATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGTTGGCTTTGCCTTGGGACATGGGCAGAACATGGTGAGCGAACTGGTGGATTTTATGCGTGCAACCGTTACGAAACTGCAAAACAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGAGAAATGGCCAAGAACTCTCTTGAGAGATATACTCATTACTATGAAAGATGGGCTACAAACCAATTGTCCAGGCAAAAAGCACTTTCAGATCTCCATCAAATGCAAAATGTGCATCTCGAGAAGCTGAGCGACGTCCAGTGCCAACCTGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGACGGGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACACGCAAAGAGACGCTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCGGGGTTGGAACGGCTTCATCAATGTGTGGAAAAGGAGCTTCAAGTTTATCTCAATGCAGAAGGACCATCGAAAGATTTTAATGATTTCCGCACTAAACTTGCTGGACTAACTAGCGTAACTAGGAACTACTTCGAGAATCTCGTCCGAGCACTTGAAAATGGACTATCAGATGTGAACTCTCATGGTGCTTGCAGCCAAACAGCAAGCATGAAGAACATAGGAGCTGGCAGTAGCAGGGGTAGAGGCAGTAAGAGCAAAGGTTCCGTGTCTAGATCAAGTGGTTCAAGTCGAACAATCGACAATTCTGATCTTTGA | 1497 | 44.02 | MDSEEEEEFDMHDAHDVDDQSVDNEDFYSDGDDDTAAIDSDDADLVDYEFIDNDSDDSEGVISHRHQLACGICFETYPCDRICAASCGHPFCNSCWTDYISTSINDGPGCLMLRCPEPSCVAAVGQDMISMLASDEDQEKYFRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGTFDVTCRCSYGFCWNCTEEAHRPVDCGTVGRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGTWAEHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQLSRQKALSDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSQTASMKNIGAGSSRGRGSKSKGSVSRSSGSSRTIDNSDL | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 6355363 | 6365057 | - | BLOR08992 | Blo18g00504 | 73808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo18g00504 | 498 | Pfam | IBR domain, a half RING-finger domain | 218 | 266 | IPR002867 | - | |
Blo18g00504 | 498 | Pfam | IBR domain, a half RING-finger domain | 139 | 201 | IPR002867 | - | |
Blo18g00504 | 498 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 151 | IPR013083 | - | |
Blo18g00504 | 498 | ProSiteProfiles | TRIAD supradomain profile. | 66 | 279 | IPR044066 | - | |
Blo18g00504 | 498 | Coils | Coil | 287 | 307 | - | - | |
Blo18g00504 | 498 | SUPERFAMILY | RING/U-box | 139 | 208 | - | - | |
Blo18g00504 | 498 | SUPERFAMILY | RING/U-box | 220 | 268 | - | - | |
Blo18g00504 | 498 | MobiDBLite | consensus disorder prediction | 23 | 39 | - | - | |
Blo18g00504 | 498 | Pfam | Ariadne domain | 288 | 451 | IPR045840 | - | |
Blo18g00504 | 498 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 67 | 462 | IPR031127 | GO:0004842|GO:0016567 | |
Blo18g00504 | 498 | CDD | RING-HC_RBR_TRIAD1_like | 70 | 120 | - | - | |
Blo18g00504 | 498 | ProSiteProfiles | Zinc finger RING-type profile. | 70 | 114 | IPR001841 | - | |
Blo18g00504 | 498 | Gene3D | - | 197 | 452 | - | - | |
Blo18g00504 | 498 | SUPERFAMILY | RING/U-box | 66 | 151 | - | - | |
Blo18g00504 | 498 | SMART | ibrneu5 | 214 | 275 | IPR002867 | - | |
Blo18g00504 | 498 | SMART | ibrneu5 | 139 | 201 | IPR002867 | - | |
Blo18g00504 | 498 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 67 | 462 | - | - | |
Blo18g00504 | 498 | MobiDBLite | consensus disorder prediction | 464 | 498 | - | - | |
Blo18g00504 | 498 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00201 | Blo-Chr1:2657711 | Blo18g00504 | Blo-Chr18:6355363 | 0 | dispersed | |
Blo03g00874 | Blo-Chr3:34559841 | Blo18g00504 | Blo-Chr18:6355363 | 1.51E-12 | dispersed | |
Blo15g00712 | Blo-Chr15:23101189 | Blo18g00504 | Blo-Chr18:6355363 | 5.02E-42 | dispersed | |
Blo18g00504 | Blo-Chr18:6355363 | Blo04g01135 | Blo-Chr4:18587297 | 2.28E-11 | dispersed | |
Blo17g00514 | Blo-Chr17:8162243 | Blo18g00504 | Blo-Chr18:6355363 | 1.52E-23 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo18g00504 | K11968 | - | tcc:18599238 | 810.831 |