Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00504 ATGGATTCGGAGGAGGAGGAGGAGTTCGATATGCATGACGCTCACGATGTTGATGATCAGTCCGTCGATAACGAGGATTTCTATAGCGATGGTGATGACGATACAGCTGCAATCGACAGTGACGATGCTGATTTGGTTGATTACGAGTTCATTGATAATGATTCGGATGATTCCGAAGGTGTTATCTCGCATCGGCACCAGCTAGCTTGTGGCATTTGTTTTGAAACCTATCCTTGTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAATTCGTGCTGGACAGATTATATTAGTACATCTATCAATGATGGTCCTGGATGTCTGATGTTACGATGTCCCGAGCCATCCTGTGTTGCTGCTGTTGGCCAAGATATGATTAGTATGCTGGCTTCAGATGAAGACCAGGAGAAGTATTTTCGTTACTTTGTTAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGCCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGTGGAACCTTTGATGTGACATGCCGCTGCTCTTATGGATTTTGCTGGAATTGTACAGAAGAGGCTCATCGCCCTGTTGATTGTGGTACTGTGGGCCGATGGATATTGAAGAACAGTGCAGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAGCCTTGTCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGTATGCACATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGTTGGCTTTGCCTTGGGACATGGGCAGAACATGGTGAGCGAACTGGTGGATTTTATGCGTGCAACCGTTACGAAACTGCAAAACAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGAGAAATGGCCAAGAACTCTCTTGAGAGATATACTCATTACTATGAAAGATGGGCTACAAACCAATTGTCCAGGCAAAAAGCACTTTCAGATCTCCATCAAATGCAAAATGTGCATCTCGAGAAGCTGAGCGACGTCCAGTGCCAACCTGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGACGGGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACACGCAAAGAGACGCTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCGGGGTTGGAACGGCTTCATCAATGTGTGGAAAAGGAGCTTCAAGTTTATCTCAATGCAGAAGGACCATCGAAAGATTTTAATGATTTCCGCACTAAACTTGCTGGACTAACTAGCGTAACTAGGAACTACTTCGAGAATCTCGTCCGAGCACTTGAAAATGGACTATCAGATGTGAACTCTCATGGTGCTTGCAGCCAAACAGCAAGCATGAAGAACATAGGAGCTGGCAGTAGCAGGGGTAGAGGCAGTAAGAGCAAAGGTTCCGTGTCTAGATCAAGTGGTTCAAGTCGAACAATCGACAATTCTGATCTTTGA 1497 44.02 MDSEEEEEFDMHDAHDVDDQSVDNEDFYSDGDDDTAAIDSDDADLVDYEFIDNDSDDSEGVISHRHQLACGICFETYPCDRICAASCGHPFCNSCWTDYISTSINDGPGCLMLRCPEPSCVAAVGQDMISMLASDEDQEKYFRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGTFDVTCRCSYGFCWNCTEEAHRPVDCGTVGRWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGTWAEHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQLSRQKALSDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSQTASMKNIGAGSSRGRGSKSKGSVSRSSGSSRTIDNSDL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6355363 6365057 - BLOR08992 Blo18g00504 73808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00504 498 Pfam IBR domain, a half RING-finger domain 218 266 IPR002867 -
Blo18g00504 498 Pfam IBR domain, a half RING-finger domain 139 201 IPR002867 -
Blo18g00504 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Blo18g00504 498 ProSiteProfiles TRIAD supradomain profile. 66 279 IPR044066 -
Blo18g00504 498 Coils Coil 287 307 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 139 208 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 220 268 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 23 39 - -
Blo18g00504 498 Pfam Ariadne domain 288 451 IPR045840 -
Blo18g00504 498 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 462 IPR031127 GO:0004842|GO:0016567
Blo18g00504 498 CDD RING-HC_RBR_TRIAD1_like 70 120 - -
Blo18g00504 498 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
Blo18g00504 498 Gene3D - 197 452 - -
Blo18g00504 498 SUPERFAMILY RING/U-box 66 151 - -
Blo18g00504 498 SMART ibrneu5 214 275 IPR002867 -
Blo18g00504 498 SMART ibrneu5 139 201 IPR002867 -
Blo18g00504 498 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 67 462 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 464 498 - -
Blo18g00504 498 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00201 Blo-Chr1:2657711 Blo18g00504 Blo-Chr18:6355363 0 dispersed
Blo03g00874 Blo-Chr3:34559841 Blo18g00504 Blo-Chr18:6355363 1.51E-12 dispersed
Blo15g00712 Blo-Chr15:23101189 Blo18g00504 Blo-Chr18:6355363 5.02E-42 dispersed
Blo18g00504 Blo-Chr18:6355363 Blo04g01135 Blo-Chr4:18587297 2.28E-11 dispersed
Blo17g00514 Blo-Chr17:8162243 Blo18g00504 Blo-Chr18:6355363 1.52E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00504 K11968 - tcc:18599238 810.831