Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00562 ATGAGCTTCCAAGATTTTCAGTATCAGAATGTAGGTAGGGCAAAGCCTGGCGCTGCTCAGAACCCGTCGCAGGCTGTAGCTGGGTCCATATTTCAGATCAACACCGCTGTTTCCACCTATCGTCGTCTTGTTGATGCCATTGGTACCGTGAAGGATACTCCGGATCACCGGCAGAAGCTCCAGGCAACCAGGCAGAGAATTCTGCAACTCGTGAAAGAAACTTCGCCCAAACTAAAAGCATTGAGTGAATCCGATCGCGATAGTCACATCACTCCAAACAAGAAACTTGAAGATGCTAAACTGGCCAGAGACTTTCAAACTGTTCTGCAAGAATTCCAGAAAGTTCAACAGCTTTCCTCAGAGCGTGAATCAACATACGCACCTTCTGGTCTTCCATTGCCAACTCCATCAATCTCTAGCTCCAGTGAACCTACAATGGATCAGGAAAGCCAACCCTTCCTCATGCAGCAAAAAAGGCAAGAGTTGATCCTGCTAGATAATGAAATTGCTTTCAATGAAGCTATAATTGAAGAGAGGGACCAGGGCATCAAGGAAATACAGGAGCAAATTGTAGAAGTCAATGAAATATTCAGGGACCTTGCTGTACTCGTTCATGATCAGGGCGTGGTTATTGATGATATTCACTCCAACATCGACTCCTCTGCGGTTGCAACAACTCAAGCTCGAGTTCAGCTGAGTAAGGCTTCCAAAAGCACGAAAACCAGAACCTCATGGTGCTGGTGGGCGCTGGGGATCGTTGCAGTAGTAGTGGTGGTTGTCGTTCTTCTGGTCGTACTCTTGTAG 804 46.89 MSFQDFQYQNVGRAKPGAAQNPSQAVAGSIFQINTAVSTYRRLVDAIGTVKDTPDHRQKLQATRQRILQLVKETSPKLKALSESDRDSHITPNKKLEDAKLARDFQTVLQEFQKVQQLSSERESTYAPSGLPLPTPSISSSSEPTMDQESQPFLMQQKRQELILLDNEIAFNEAIIEERDQGIKEIQEQIVEVNEIFRDLAVLVHDQGVVIDDIHSNIDSSAVATTQARVQLSKASKSTKTRTSWCWWALGIVAVVVVVVVLLVVLL 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7935770 7937848 + BLOR09050 Blo18g00562 73866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00562 267 Gene3D - 167 267 - -
Blo18g00562 267 SMART tSNARE_6 168 235 IPR000727 -
Blo18g00562 267 CDD SNARE_Qa 176 234 - -
Blo18g00562 267 SUPERFAMILY t-snare proteins 20 228 IPR010989 GO:0016020|GO:0016192
Blo18g00562 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Blo18g00562 267 Pfam SNARE domain 210 261 IPR000727 -
Blo18g00562 267 Gene3D - 12 129 - -
Blo18g00562 267 PANTHER SYNTAXIN-22-LIKE 17 264 - -
Blo18g00562 267 PANTHER SYNTAXIN 17 264 IPR045242 -
Blo18g00562 267 SMART SynN_4 11 124 IPR006011 GO:0016020
Blo18g00562 267 MobiDBLite consensus disorder prediction 119 148 - -
Blo18g00562 267 Pfam Syntaxin-like protein 28 126 IPR006011 GO:0016020
Blo18g00562 267 ProSitePatterns Syntaxin / epimorphin family signature. 179 218 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo17g00576 Blo18g00562 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00982 Blo-Chr2:37993441 Blo18g00562 Blo-Chr18:7935770 5.22E-87 dispersed
Blo03g00106 Blo-Chr3:3337321 Blo18g00562 Blo-Chr18:7935770 3.21E-68 dispersed
Blo18g00562 Blo-Chr18:7935770 Blo15g00703 Blo-Chr15:22339372 9.93E-11 dispersed
Blo17g00576 Blo-Chr17:10693580 Blo18g00562 Blo-Chr18:7935770 3.64E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00562 - K08488 fve:101306155 330.102