Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00601 ATGGAGGCACTTGAGACCATACCACTTAAAGGTTCGTTTCTCAGCACCAGCACCATTATTGCTCTCGCAGTGTTCTTCACTCTCCTCTGTGCGTGCATCGTTATTGGTCATCTCTTGGAAGAGAATCGGTGGGCAAATGAGTCGATAACCGCTCTTCTCTTGGGTTTGGTAGCAGGAGTTGTGGTGTTGCTAATTAGTAAGTTTCATAGTTCGAGAATTTTAGTGTTCAGTGAGGACTTGTTCTTCCTTTATTTGCTTCCACCAATCATTTTCAATGCTGGTTTCCAGGTAAAAAAGAAGCAATTTTTCAAGAACTTTACTACAATCTTGTTGTTTGGAGCATTTGGAACGATTATTTCTTTCTGCATCGTATCCATATGTGCCTATTTTATTTTAAAAAAAATTGGCGTGTCGGGCCTGACCGTTCAGGACTACTTAGCTGTTGGTGCAATATTATCCGCAACTGATTCAGTTTGTACATTACAGGTTCTCAGTCAAGATGACACGCCTTTTCTTTACAGTGTCGTGTTTGGAGAAGGAGTGGTGAATGATGCTACTTCAATTGTCATTTTCAATGCAGTGCAATCACTTAACTTAAGCAAAATCGATGCTATTACGGCTTTAAGATTGTTGGGGCAGTTTCTTTACCTCTACTTTACCAGCACTGCTCTTGGAGTAGTGGTGGGTCTTATAAGCGCTTTTATCATAAAAACACTTTATTTTGGAAGGCATTCCACCGACCGTGAAGTTGCACTGATGATGCTGATGGCTTATTTATCATATATGTTGGCTGAGCTTTTAAATCTGAGTGGAATTCTTACTATTTTCTTCTGCGGAATAGTCATGTCCCATTACACATGGCACAATGTGACTGAAAGCTCACGAATCACAACCAAGCATGCATTTGCGACAATTTCATTTATTGCGGAGACTTTTATCTTCCTTTACGTGGGTATGGATGCCTTGGACATTGACAAATGGAAGGAAAGCGAGGCAAGTGCAGGAACTTCATTCGCCATTAGTGCCACTTTCTTTGCTCTAGTGCTAATCGGAAGAGCATCATTTGTGTTCCCTATTTCCAACATTGGCAATTGTTTCAGGAAAAGAGAAAGTTCAAAAATTGAGCTTAGACAACAGTTCATAATATGGTGGGCTGGCGTCATGAGAGGTGCTGTTACTGTTGCTTTGGTTTATAGCCAGTTTTCTTCCTCCGACGACTCCTCGAAATCGCAGGCCAACGCCTTAATGATCACTTGTACAATCATCGTTGTTTTATTTAGCACAATTGTATTTGGGTCAGCAACAAAGCCTCTGATTGAAGCAGTACTCCTAAGACATGCTAAACCAACACTTTCAAATGCAACTGACATTCCAAGCCTCGAAGAATTACACATCCCGTTCTTCGACAATGGAGGTACCGATGGCGATCAAGGCAACAGCGCAAGACCGCCAAAGGTTGGTAGTCTCCGCCGTTTGATAACTAACCCTACTTCAACTGTTCATTATTTTTGGCGTAAATTCGACGATAAGTTCATGAGACCAGTGTTCGGTGGCCGGGGTTTTGTTCCGTTTGTCCCGGGATCACCTAGTGGTGCAAGAGACGAAACTTCTTGA 1614 42.07 MEALETIPLKGSFLSTSTIIALAVFFTLLCACIVIGHLLEENRWANESITALLLGLVAGVVVLLISKFHSSRILVFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGAFGTIISFCIVSICAYFILKKIGVSGLTVQDYLAVGAILSATDSVCTLQVLSQDDTPFLYSVVFGEGVVNDATSIVIFNAVQSLNLSKIDAITALRLLGQFLYLYFTSTALGVVVGLISAFIIKTLYFGRHSTDREVALMMLMAYLSYMLAELLNLSGILTIFFCGIVMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVGMDALDIDKWKESEASAGTSFAISATFFALVLIGRASFVFPISNIGNCFRKRESSKIELRQQFIIWWAGVMRGAVTVALVYSQFSSSDDSSKSQANALMITCTIIVVLFSTIVFGSATKPLIEAVLLRHAKPTLSNATDIPSLEELHIPFFDNGGTDGDQGNSARPPKVGSLRRLITNPTSTVHYFWRKFDDKFMRPVFGGRGFVPFVPGSPSGARDETS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9356710 9362084 - BLOR09089 Blo18g00601 73905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00601 537 PANTHER SODIUM/HYDROGEN EXCHANGER 10 536 IPR018422 GO:0006812|GO:0015299|GO:0016021
Blo18g00601 537 Gene3D - 140 193 - -
Blo18g00601 537 Pfam Sodium/hydrogen exchanger family 25 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Blo18g00601 537 PANTHER SODIUM/HYDROGEN EXCHANGER 10 536 - -
Blo18g00601 537 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 23 449 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Blo18g00601 537 PRINTS Na+/H+ exchanger signature 109 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Blo18g00601 537 PRINTS Na+/H+ exchanger signature 149 159 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Blo18g00601 537 PRINTS Na+/H+ exchanger signature 80 91 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Blo18g00601 537 PRINTS Na+/H+ exchanger signature 94 108 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00328 Blo-Chr5:3757500 Blo18g00601 Blo-Chr18:9356710 0 dispersed
Blo11g00954 Blo-Chr11:21021981 Blo18g00601 Blo-Chr18:9356710 6.62E-13 dispersed
Blo17g00606 Blo-Chr17:11984139 Blo18g00601 Blo-Chr18:9356710 4.00E-10 dispersed
Blo18g00601 Blo-Chr18:9356710 Blo18g00837 Blo-Chr18:24760235 4.12E-17 dispersed
Blo18g00601 Blo-Chr18:9356710 Blo18g00584 Blo-Chr18:8744593 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00601 K14724 - jre:108988829 802.742