Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00646 ATGGCGCAGATTCAGGTTCAACATCAGACTCCGATGGCCGTTGCGGGTGCTAATGGCGTGGCTATAGCTGCCGGAGGGAGTCCGGGGGGATCTCCATTCGTCCCGACGTCGCTTTATGTTGGAGATCTTGACGTCAACGTCACTGACTCGCAGCTTTATGATCTGTTCAATCAAATGGGTCAAGTTCTATCTGTTCGGGTCTGTCGGGACATGACCACTCGTCGATCTCTCGGTTATGGCTATGTCAACTATGGCAATCCTCAAGATGCGGCCCGGGCATTGGAAGAATTAAATTTTACTCCATTGAATGGCAGGCCCATTAGAATTATGTATTCTCACCGTGACCCAAGTGTCCGCAAGAGTGGTGCTGCAAATATATTCATAAAGAATCTGGACAAGGCTATTGATCAGAAAGCATTGCATGATACGTTTTCCTCCTTTGGAAGTATTCTTTCATGCAAGATAGCTACTGATACTTCTGGCCTATCCAAAGGTTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCCCAAAATGCAATAGAAAAATTAAATGGCATGCTGATTAATGACAAACAGGTTTATGTTGGACACTTTCTTTGTAAACAGGAAAGAGAAAGTAGTTCAGATAAGGCAAAATTTAATAACGTTTACGTAAAGAATTTATCAGAATCAACTACGGATGAAGACTTGAAGAATATTTTTGGTAAATATGGAGCTATCACCAGTGCTGTTGTGATGAGAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTAAACTTTGAAGGTGCAGATGATGCTGTCAAAGCTGTTGATGAACTGAATGGGAAGACGTTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAGAAAAAATTAGAAAGAGAAGTTGAGCTTAAGGGTCGATTTGAGCAAACTGTGAAGGAAGCATATGATAAAAATCAAGGTGTCAACTTGTATGTCAAGAACTTGAATGATAGTATTGATGATGAAAAACTTAGAGATTTGTTCTCGGAGTTCGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCATTCGCAACTCAAGAGGAAGCATCTCGTGCTCTTGCTGAGGTGAATGGTAAAATGATTCTCAGTAAACCTCTCTATGTAGCTTTGGCACAACGCAAAGAAGAGAGAAGGGCGAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATGGCACCAGCAGTTGCTCCTCGTTTACCCATGTTCCATCCAGGTGCTGTGGGTCTTGGTCAACAGTTTTTATATGGACAAGCACCGCCTGCTTTAGTTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCAGGAATGAGGCCGGGAGGAGTTCCTATGCCAAACTTCTTTGTTCCCATGGTCCAGCAGGGTCAGGTTGGTCGACGATCAGGAGGTCGGCGGGGATCAGGTCCTCTGCAACAAACTCAGCAGCCTGTACCACTGATACAACCTCAGATGCTTCCAAGGGGACGAATATATCGTTATCCTCCTGGTCGTAACATGCCTGATGGACCCATACCTGGTGTTGCTGGAGGTTTACTTTCGTCTCCTTATGAGTTGGGTGGCATGTCTATGCAAGACCCATCTCTTGGACAATCTGCTCCTGTACCCGCTTTGGCTACTGCCCTTGCTAATGCTACTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCGTTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCTGCTAAGGTAACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTTGAGTCGCCAGAGGCTTTGAGGGCAAAAGTTGCAGAGGCTATGGAGGTTCTCAGGAGTGTTGCCCAACAGCAGGGGAATTCTGCAGTTGATCAACTCTCCTCCCTCTCTCTTAGCGATGATCTTGGAGGGATTGGTGAGGCTTATTGTCCTGCTATAAGGAAATTGACATCCGCCCCAATGCAAGGGCAAAGTGGTGGTGTTGGCTCCTTGCCAGAAACATTGAATTTCGACCATGGCTCTTCATCGGGTTACACCGCTGTAGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTTCAGAAAACCGGATATCTGACTACTTATTGTTACAGCAAAGTGATGTAAACTTATCATATGTTGACACAGTGGGCAGGGAGCAACAGAGCTTGGGCAGATGGTCCATAGGTGAACCTAGCTCTAGTGGTGTAGCCATTGAAATGGGTTGTGATGAGCGAAAAGCAGAGCTTGGATGGACCTCAGCGACTCCCTGTGTGGGACATTGTCCGATGTTAGATGACCTGCGGCATGGAGCATCTAATAATTTTCCACTGGACAATGTCAGTGTTAATCCACTGTTTATACAAGGTTCCAATTCAGGTGCAATTCCACCAAATCTTAGCTTGAATGCAGGTTACATTAGTCACAATGTCACTGAATGCCCTATTATTTTCAACGCTAGTGGATTAGAAAATGAGGGAATTCCACCCACAAGTGGTTCAGACAATTTCGTCTCTCCTTTTGAAAATGGTAGTTTGTCACTTGAAGGGAGCGATGGCAGACCAGGTTCCTTGATGGAGGGTCATCATTTATCTTGTAAAAGAAAGGCATTTGAAGGGTCCTCTGATGGCGGAAGCGCTAGCTATTCCCAGTCCGCTGGTAAAACTGTAATTCCCTCTTGCTCTAATGCAAGCACCAATTTCGTTTCATCTGCTCTGCCTGATCAAGCAAATCAAAGGTTAAGACTTGGTGTAAGAGAAGTCATTCCGGATGGCCTTTCTGATTGTAATGTTGCTGAAACCACCGAAAATGCCCAAAGAAATTTCCCTTTGAGGATTAGTTCCTCAAATCAATCAGGTTCAACTCATCCTAACACGACTTCATCAGGGAGTGCTAGGCATTCTGGGATCTCATCTTCTCAAGCCCCTAACAGACTTCTTCCAGTCAACTATTCTCCAAATTTAAGGTCAGCACCAGCCACGGACAATGCAACTACTCAAAACCCACCATTTGTTCTTCGTGTTCCTGCTTTGGCTCGAAGTGTGCTATCTTCCAGGGCGAGTGGGGGGAGGGAGAGTTTGAATTCAAGAATTGGTGGTTCATCCGGCTTGGTTGGAGATAGATGTGATATTCAACGTGAGGATGCCACCTCAAGTAGCACGGCGAGAATTATATTGGAAAATTCTCTGTTTTTACCAGCAACTGAATCAAGAAATCCATCCCGAAATCCACCAAATCGACGTAGACATGGTGGAAACTTGATTATTCCTGGCAATGTTCCATCTACATCTAGGACCAGATCCACTATGGCGTCTCATCCACCATCTGGCTCTTGGCTTCCTCATGAGAGTTCTCTTCCTCCCCAATATCCAACGCTATTGTCGGAATACGTTCGTCGACAATTGTTTCCTTCAACTTTGGAGTCTGGTGGGGGCCAGGCAAATAATCCTTCATCATTAAATTCAGGTCCCTTCTCTGAAGATATGCTTCTCTCTGGAGCTGGTAACCAGGGACATCATTCATCACTCCCCAGGGCCCTGCCGTGGATTGAGAGACAAGGTGAAGGGGCACTTGGTATTCCATATTCCTTGCGAACGATAGCTACTCCTGGGGAAGGTAGTGGAGGCCATAGACTAGTATCAGAGCAGATTCGCAACGTCTTAGGTCTCATGCGGCGAGGTGAGAACGCACGAATTGAGGATGTTATGATCCTTGATCAGTCTGTATTATTTGGGGTGGCTGACTTTCATGATCGTCACCGAGACATGCGCCTTGATGTAGATAACATGTCGTATGAGGAGTTATTGGCTCTAGAAGAGCGAATTGGAAATGTGAGCACTGGGCTTTCTGAAGACACAATTCTAACCCGCCTTAAACAGAGCAGATGTTCTCCTGTCGTAGGATCTCCAATGGAGGAAGAACCTTGCTGTATTTGTCAAGAGCAATATATCGAGGGAGAAGATGTCGGAAAGTTAGATTGTGGGCATGATTATCACACCGGCTCTATTCACAAAGATTACTTAATTAGAGAGGTAGATGTGGTAGCATGGTGTTATTCCAATCATGAACTCTCTTGGGGCCAAGCCCTCTTTCCTCTCTCGGGAGGTAGACCACGTCCCAAGCCACCTTGGCATGGAAGGTGGGCTGTTGGATGCACATGGATGGTGGTTGCTGGGCATGCATGGGCTGCAGGTGTGCGTGGGCTTCAAATGGGTTGCTGGACTGGGCGTGATGGGCTTCGTTGGACCGGTGAAACGCTGGTGCACGGGCACACGGGAGGGCTGACCTGCAAAGAATGCGTGGATTGGGCGCGCTGCCACGAGGCTGATCGAGCACTGGGCTACGAGTTGGACGAGCATTGTGCACGTGGTGTGCGCGTTGACGAACTGGGAGCGAGCGCTGCTGCACAGTTTGGCTGA 4476 46.6 MAQIQVQHQTPMAVAGANGVAIAAGGSPGGSPFVPTSLYVGDLDVNVTDSQLYDLFNQMGQVLSVRVCRDMTTRRSLGYGYVNYGNPQDAARALEELNFTPLNGRPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDQKALHDTFSSFGSILSCKIATDTSGLSKGYGFVQFENEESAQNAIEKLNGMLINDKQVYVGHFLCKQERESSSDKAKFNNVYVKNLSESTTDEDLKNIFGKYGAITSAVVMRDGDGKSRCFGFVNFEGADDAVKAVDELNGKTFDDKEWYVGKAQKKLEREVELKGRFEQTVKEAYDKNQGVNLYVKNLNDSIDDEKLRDLFSEFGSITSCKVMCDPNGVSRGSGFVAFATQEEASRALAEVNGKMILSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPAVAPRLPMFHPGAVGLGQQFLYGQAPPALVPQAGFGYQQQLVPGMRPGGVPMPNFFVPMVQQGQVGRRSGGRRGSGPLQQTQQPVPLIQPQMLPRGRIYRYPPGRNMPDGPIPGVAGGLLSSPYELGGMSMQDPSLGQSAPVPALATALANATPEQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEAMEVLRSVAQQQGNSAVDQLSSLSLSDDLGGIGEAYCPAIRKLTSAPMQGQSGGVGSLPETLNFDHGSSSGYTAVDQQICWNNMRNPSENRISDYLLLQQSDVNLSYVDTVGREQQSLGRWSIGEPSSSGVAIEMGCDERKAELGWTSATPCVGHCPMLDDLRHGASNNFPLDNVSVNPLFIQGSNSGAIPPNLSLNAGYISHNVTECPIIFNASGLENEGIPPTSGSDNFVSPFENGSLSLEGSDGRPGSLMEGHHLSCKRKAFEGSSDGGSASYSQSAGKTVIPSCSNASTNFVSSALPDQANQRLRLGVREVIPDGLSDCNVAETTENAQRNFPLRISSSNQSGSTHPNTTSSGSARHSGISSSQAPNRLLPVNYSPNLRSAPATDNATTQNPPFVLRVPALARSVLSSRASGGRESLNSRIGGSSGLVGDRCDIQREDATSSSTARIILENSLFLPATESRNPSRNPPNRRRHGGNLIIPGNVPSTSRTRSTMASHPPSGSWLPHESSLPPQYPTLLSEYVRRQLFPSTLESGGGQANNPSSLNSGPFSEDMLLSGAGNQGHHSSLPRALPWIERQGEGALGIPYSLRTIATPGEGSGGHRLVSEQIRNVLGLMRRGENARIEDVMILDQSVLFGVADFHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTILTRLKQSRCSPVVGSPMEEEPCCICQEQYIEGEDVGKLDCGHDYHTGSIHKDYLIREVDVVAWCYSNHELSWGQALFPLSGGRPRPKPPWHGRWAVGCTWMVVAGHAWAAGVRGLQMGCWTGRDGLRWTGETLVHGHTGGLTCKECVDWARCHEADRALGYELDEHCARGVRVDELGASAAAQFG 1491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11570892 11594621 + BLOR09134 Blo18g00646 73950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00646 1491 MobiDBLite consensus disorder prediction 956 1023 - -
Blo18g00646 1491 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 1416 1444 - -
Blo18g00646 1491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Blo18g00646 1491 CDD RRM3_I_PABPs 214 293 - -
Blo18g00646 1491 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Blo18g00646 1491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Blo18g00646 1491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Blo18g00646 1491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Blo18g00646 1491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Blo18g00646 1491 Gene3D - 205 302 IPR012677 -
Blo18g00646 1491 CDD RRM4_I_PABPs 317 395 - -
Blo18g00646 1491 SMART rrm2_1 216 288 IPR003954 GO:0003676
Blo18g00646 1491 SMART rrm2_1 319 391 IPR003954 GO:0003676
Blo18g00646 1491 SMART rrm2_1 125 197 IPR003954 GO:0003676
Blo18g00646 1491 SMART rrm2_1 37 110 IPR003954 GO:0003676
Blo18g00646 1491 SMART rrm1_1 125 197 IPR000504 GO:0003723
Blo18g00646 1491 SMART rrm1_1 319 391 IPR000504 GO:0003723
Blo18g00646 1491 SMART rrm1_1 37 110 IPR000504 GO:0003723
Blo18g00646 1491 SMART rrm1_1 216 288 IPR000504 GO:0003723
Blo18g00646 1491 Gene3D - 118 204 IPR012677 -
Blo18g00646 1491 PANTHER POLYADENYLATE-BINDING PROTEIN 25 640 - -
Blo18g00646 1491 PANTHER RNA BINDING PROTEIN 25 640 - -
Blo18g00646 1491 SUPERFAMILY RNA-binding domain, RBD 36 203 IPR035979 GO:0003676
Blo18g00646 1491 MobiDBLite consensus disorder prediction 1109 1136 - -
Blo18g00646 1491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Blo18g00646 1491 MobiDBLite consensus disorder prediction 1158 1178 - -
Blo18g00646 1491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Blo18g00646 1491 SUPERFAMILY RING/U-box 1324 1352 - -
Blo18g00646 1491 MobiDBLite consensus disorder prediction 1087 1136 - -
Blo18g00646 1491 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Blo18g00646 1491 MobiDBLite consensus disorder prediction 1158 1189 - -
Blo18g00646 1491 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 37 631 IPR006515 GO:0003723
Blo18g00646 1491 SUPERFAMILY RNA-binding domain, RBD 215 398 IPR035979 GO:0003676
Blo18g00646 1491 SMART poly_2 570 633 IPR002004 GO:0003723
Blo18g00646 1491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Blo18g00646 1491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1292 1374 IPR013083 -
Blo18g00646 1491 MobiDBLite consensus disorder prediction 956 1022 - -
Blo18g00646 1491 CDD RRM2_I_PABPs 122 198 IPR045305 -
Blo18g00646 1491 SUPERFAMILY PABC (PABP) domain 499 647 IPR036053 GO:0003723
Blo18g00646 1491 Gene3D - 554 637 - -
Blo18g00646 1491 CDD RRM1_I_PABPs 37 116 - -
Blo18g00646 1491 Gene3D - 303 407 IPR012677 -
Blo18g00646 1491 Gene3D - 27 117 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01747 Blo-Chr1:57155467 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo02g00829 Blo-Chr2:29905024 Blo18g00646 Blo-Chr18:11570892 6.00E-62 dispersed
Blo05g00824 Blo-Chr5:29987304 Blo18g00646 Blo-Chr18:11570892 5.27E-10 dispersed
Blo08g00046 Blo-Chr8:405232 Blo18g00646 Blo-Chr18:11570892 4.11E-10 dispersed
Blo13g00582 Blo-Chr13:27941169 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo13g00932 Blo-Chr13:31795827 Blo18g00646 Blo-Chr18:11570892 6.92E-07 dispersed
Blo14g00233 Blo-Chr14:2045686 Blo18g00646 Blo-Chr18:11570892 2.79E-11 dispersed
Blo17g00873 Blo-Chr17:28792878 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo17g00874 Blo-Chr17:28800371 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo18g00057 Blo-Chr18:390964 Blo18g00646 Blo-Chr18:11570892 4.81E-26 dispersed
Blo18g00646 Blo-Chr18:11570892 Blo04g00479 Blo-Chr4:3968617 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00646 K13126 - jre:108990379 993.801