Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00647 ATGAAGGTTCATCAATTTGCATGCCGATTCTGGGACCTCGAACCACCCTCGCTTTCCCATGGCTGCAAGCGTCTCCGTCCTCTCGCTCCCAAGCTTCAAAACAACACTGATACTACCATCTCCAACTTTGATCTCAAGAACTACATCAGCCCCAATTGCTGCCCTAGAACAAATCCTTCTTCTTCCTTCTCTTCAGACGACAAGAGAGATTCACCTCAAGTGGAGACGCATCCTGGAGGGACAAGGTGGAATCCAACTCAAGAGCAGATAGGGATATTGGAGATGCTTTACAGAGGAGGAATGAGGACTCCTAATGCACAAGAAATAGAACAAATGACAAAACAGCTTGGTAATTATGGAAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGAGAAAGGCAGAAACAGAAGCGAAATAGTCTTGGTCTTTGCCATAGCCCAAGAGCATCTGTAGCGGACTCTAGGGAATGCCCTGTAATATTTTTTCCATTTTATGATGTTGAAGTTGCAGTAGAAAAAGTTTCTAATGGAATTTATGTGCAGGTAGAAGGAATAGATCATAAAAGAGTGGAAGATAGTTCGCTCAAGAGAAAGTGCAGAAGCTGGGTATTTGAATGCTTGGAGGAAGGGGAAGATCCAGGAGACAGAACTTTGGAGTTGTTTCCATTGCACCCAGAAGGTAGATGA 705 43.12 MKVHQFACRFWDLEPPSLSHGCKRLRPLAPKLQNNTDTTISNFDLKNYISPNCCPRTNPSSSFSSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQEIEQMTKQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHSPRASVADSRECPVIFFPFYDVEVAVEKVSNGIYVQVEGIDHKRVEDSSLKRKCRSWVFECLEEGEDPGDRTLELFPLHPEGR 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11829088 11829907 - BLOR09135 Blo18g00647 73951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00647 234 Gene3D - 80 147 - -
Blo18g00647 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 234 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Blo18g00647 234 SMART HOX_1 78 145 IPR001356 GO:0003677
Blo18g00647 234 MobiDBLite consensus disorder prediction 56 85 - -
Blo18g00647 234 Pfam Homeodomain 81 140 IPR001356 GO:0003677
Blo18g00647 234 CDD homeodomain 81 142 IPR001356 GO:0003677
Blo18g00647 234 SUPERFAMILY Homeodomain-like 76 146 IPR009057 -
Blo18g00647 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 234 - -
Blo18g00647 234 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00647 - - - cit:102627740 283.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00647 Blo-Chr18:11829088 Blo01g00756 Blo-Chr1:10156514 3.08E-24 dispersed
Blo18g00647 Blo-Chr18:11829088 Blo13g01096 Blo-Chr13:33107554 1.12E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13603 PF00046 Homeodomain 1.60E-18 CL0123 Blo TF