Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00682 ATGTGTGCTGCGGAGTTTCGGACTCATGCGGACGAAAGGATTCCTGTCCGCATTGAATCTGTACAATTTTTTGGACAATTCGAACTACTTGCGGACGATGTAGACAAAAGGATTCGCGTCCGCATTGAATCTGTACAATTTCTGGGACAATTCAGACGACTTGGGGATGAAGCGGATGAAGAGATTCGCGTCCGCCATGAATCTGTACAAATCTTGGACAATTCAGACAATGCAGACGATACATGCGGACGTCATTTCGCGTTCGCAAGGCACCTTCGGACGCCTGCATTCAGTAGCTCATCCATTCCCTGCCAGCTTTCCCCTTTAGTCTACGTCTATAAGAGGATCAAGTTGATATGGAGTATGGATTTTAATGCTATATTTTGTTTAGGAACCGTTAGGAGTTGGAACTATTGTGGATATACATTGGTTTCTATTTTGTTGGATCTTGGTGGCTGTTCCTATTTGGTGGCTGTCCTATTTATGCTAAGTTGCTGGAAAGCTAAGGGTTTAATGAAGCTCTTGGCTGATAATGCTCCCAAAGCTATGAAGGAGCAGAAGTTCGAGGGATACTTTGGTCGAAAGATTGCCATCGATGCCAGCATGAGCATCTATCAGTTCCTTATTGTTGTTGGAAGAAGTGGGACTGAGATGCTGACCAATGAGGCCGGGGAAGTAACTAGTCATTTGCAAGGCATGTTTTCTAGAACAATTAGGCTTCTTGAAGCTGGAATGAAGCCAGTCTATGTTTTTGATGGGGCGCCTCCTGACTTGAAAAAACAAGAGCTCGCAAAGCGTTTCTCCAAAAGAGCAGATGCCACTGAGGATTTGGCAGCTGCTGTGGAGGTTGGAAATAAAGAGGACATTGAAAAATTCAGCAAAAGGACAGTGAAGGTGACCAAACAACATAATGAAGACTGCAAAAAACTCTTAAGGCTCATGGGAGTACCTGTGGTAGAGGCTCCATCAGAAGCTGAGGCACAATGCTCTGCACTTTGCAAATTAGGAAAGGCAGGATTCACTGTATATGCGGTGGCTTCTGAAGACATGGATTCACTAACATTTGGAGCTCCTAAATTTCTTCGTCATTTGATGGATCCTAGCTCAAGAAAAATCCCTGTAATGGAATTTGATGTGACCAAGGTTTTGGAGGAGCTAAACCTAACTATGGATCAATTCATTGATCTGTGCATTCTTTGTGGATGCGATTATTGTGACAGCATTCGAGGGATAGGGGGACAGACTGCTCTGAAGCTCATTCGCCAGCATGGCTCCATTGAAAATATATTAGAGAACATAAACAAAGAGAGATACCAAATACCTGATGATTGGCCATATCAAGAGGCTCGACGTCTCTTTAAAGAACCTGTTGTAATAAATGATGAAGAGCATATTGACATTAAGTGGATTGCACCTGACGAAGAGGGTTTGATAACTTTTTTGGTGAATGAAAATGGGTTCAACAATGAAAGAGTAGTAAAGGCAATAGAAAAAATTAAAGCAGCCAAGGACAAGTCATCACAGGGTCGTTTGGAATCCTTTTTTAAGCCAGTGGCAAACTCTGCTCTGCCCATAAAGCGGAAGGGTAGAAGAATAGAATCTCCTTCGTTCATATCTTTTTTGTCTTCTGTCATAGAATTAGAATATTCAGTTTTTGCTACATTTCTGCTGATGATAGAGGATGGGCGTTCTCCAAAGGCGTTAGCAGACGAAGGTTTGTGCCCATTGGATGAAGAGACAGACGTCATTCAAGAAGGATGGATGGCTACAATGGAGGATGGGCCTCCTCCAAAGGCATTGGCGGATGAAGATTTCTGTCAGTTAGATGAAGGGACGAACGTCATTCAATGTGGAGGGACGTCCGTTATTGGTTGA 1875 43.25 MCAAEFRTHADERIPVRIESVQFFGQFELLADDVDKRIRVRIESVQFLGQFRRLGDEADEEIRVRHESVQILDNSDNADDTCGRHFAFARHLRTPAFSSSSIPCQLSPLVYVYKRIKLIWSMDFNAIFCLGTVRSWNYCGYTLVSILLDLGGCSYLVAVLFMLSCWKAKGLMKLLADNAPKAMKEQKFEGYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGAPPDLKKQELAKRFSKRADATEDLAAAVEVGNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCSALCKLGKAGFTVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDVTKVLEELNLTMDQFIDLCILCGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPDDWPYQEARRLFKEPVVINDEEHIDIKWIAPDEEGLITFLVNENGFNNERVVKAIEKIKAAKDKSSQGRLESFFKPVANSALPIKRKGRRIESPSFISFLSSVIELEYSVFATFLLMIEDGRSPKALADEGLCPLDEETDVIQEGWMATMEDGPPPKALADEDFCQLDEGTNVIQCGGTSVIG 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13862075 13875519 - BLOR09170 Blo18g00682 73986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00682 624 Pfam XPG I-region 315 403 IPR006086 GO:0004518
Blo18g00682 624 CDD H3TH_FEN1-Euk 391 460 - -
Blo18g00682 624 Gene3D - 175 391 - -
Blo18g00682 624 CDD PIN_FEN1 169 501 - -
Blo18g00682 624 Pfam XPG N-terminal domain 169 272 IPR006085 GO:0004518
Blo18g00682 624 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 311 328 IPR006084 -
Blo18g00682 624 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 193 207 IPR006084 -
Blo18g00682 624 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 247 266 IPR006084 -
Blo18g00682 624 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 393 408 IPR006084 -
Blo18g00682 624 Gene3D - 392 455 - -
Blo18g00682 624 SMART xpgineu 312 388 IPR006086 GO:0004518
Blo18g00682 624 SMART 53exo3 194 475 IPR002421 GO:0003677
Blo18g00682 624 SMART HhH_4 390 423 IPR008918 GO:0003677|GO:0003824
Blo18g00682 624 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 388 520 IPR036279 -
Blo18g00682 624 ProSitePatterns XPG protein signature 2. 315 329 IPR019974 GO:0016788
Blo18g00682 624 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 169 533 IPR006084 -
Blo18g00682 624 Hamap Flap endonuclease 1 [fen]. 169 516 IPR023426 GO:0016788
Blo18g00682 624 SMART xpgn3 168 273 IPR006085 GO:0004518
Blo18g00682 624 PANTHER FLAP ENDONUCLEASE 1 169 533 - -
Blo18g00682 624 SUPERFAMILY PIN domain-like 169 403 IPR029060 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00257 Blo-Chr11:2063182 Blo18g00682 Blo-Chr18:13862075 2.21E-13 dispersed
Blo18g00682 Blo-Chr18:13862075 Blo01g00145 Blo-Chr1:2002231 2.12E-14 dispersed
Blo18g00682 Blo-Chr18:13862075 Blo04g00842 Blo-Chr4:9171425 1.65E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00682 K04799 - vvi:100242559 639.802