Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00692 ATGGCGGGGCCATCACCATCACGTTCGCAGCATCGCAGTTGGACCAGCAGGAGGTTGGGCCGCAGCGCCATTCAGTGGGCCGTAGGAGCGCTGAGAGAAGATCTCGCAGAATCTCGGATTCTTAAGGATTCTGCGCGTCGACGGAATAGGAAGGCGCGTGCGCAGCAGCAGAGATCGAGGAAAATCCCAGATTTGTGGGATTCACACGGCAACTGGATAGGATTGGCGCGCTACACAGCAAATTGGAAGCGGACACGTGGCAGATCAGATTTTATTGTTCCAACTAATTTAGGTTTTTTTGGCATCTTTCACCACCCTACAGTTTGGACGAAAATGTCTTCTTCAAGACCGAGTCAATCATCAAGCAGCTCAGGTCGATCAAGACACAGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAGGAATCCAGTAGTTCTTTCGACTACTCAAGTTCAGTGCGCTTTACCAACACTTTTGGTGAAGATCAACAACCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCTTATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCCTACAGTGAAAATGCCACGGAAATGCTAACTATGGTCAGTCATGCAGTCCCAAGTGTTGGTGAACATCCAGTTCTTGGCATTGGGATTGATGTTAGGTCCATTTTTACTGCCCCAAGTGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTCTTAGTTCATTGTAAGACATCTGGGAGGCCCTTCTATGCAATCGTTCATCGTGTTACTGGAAGCTTGATCATCGATTTTGAACCAGTGAAGCCTTATGAAATACCAATGAATGCAGCTGGGGGCCTAAAATCTTACAGGCTTGCAGCAAAAGCAATTAACAGGTTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGTTCAAGAGGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCATGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCATTATCCAGCTACTGATATCCCTCAAGCTGCACGGTTTTTATTCATGAAGAATAAGGTCCGAATTATTGTTGATTGTCATGCAAAACCTGTGAAAGTGATCCAAGACAAAAAACTTTCCTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGGCTATGGCTGTTGTGGTCAACGAGGAAGATGACGATAATGAAAATCCCAATCCCGTGCAACCACAAAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTCTTAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAACAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTTTTGTGCGACATGTTAATGCGAGACGCACCATTAGGCATTGTGACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCATGATATACAAAAATAAGGTATGGAGATTGGGAATAACTCCTAGTGAATTCCAGCTCCAAGAAATTGCCGCATGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGCTTGTATGATGCGGGTTTCCCAGGAGCTCTCGCACTTGGTGATGGAGTGAGTGGAATGGCTACTGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTACCCATGCTGTCGCAGAAATTCGATGGGCCGGGGCAAAGCATGAAGCTGGTGAAAGGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCATGGAAGGACTATGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTGAAAGATGTGCAAATGGTTGATACGAACAGCAAATCAATTCATACAAAACTCAGCAACCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGGAGACGGCCTGGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGACGAAGCTATCGGAAAGCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTAGATATAGTCAAGAAGTTGTTGTACTTGGCGTTCCAAGGACAAGAGGAGAAACACGTAGAATTTGAGATCAGAACTCATGGGCCTAGGATCGATGCAGGTCCCATTAGCTTAGTTGTGAACGCTTGTGCAAGCAGGGATTTGGAGGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGACTACATAGCAATTGTGCAGAACCCAAATCCACTAATCCCCCCTATATTTGGTATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCGATGACAAAGTTAAGTGGGTGGAAGCGAGATGAAGTTGTTGATAAAATACTTTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCCGGTCAAGAATCAAGAATCGTGTGTAAATCTTGGTGTTGTGCTTAATAATGCTATGAGTGGCCAAAATCCTGAAAAGATTTCGTTTGGTTTCTATGATCGGAAAGGAAAATACTTAGAATGTCTGTTGTGTGCGAGTAAGAAAACAGACAGAGATGGTGCAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTGCAGAAAGCACTCCACGTGCAGCACTTATCCGAGAAAACTGCCATAAAGAGATCGAAAGCATTGGCGTATATGAAAAGGCAGATACGAAGTTCTCTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAATCAAGCACACAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTACTCTACATGAACTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAAGGTGTTCTCATACTAAATGAGACAGCTAAAGAGATCCAGAATGAAGCTCTATATGGTGATAATGCGAGGCTTCAGCAAATTTTGGCTGATTTCTTACTAACATCAGTCAGTTTTTCCCCAGTAGGCGGCCAGATTATTATTTCGGCCAGTCTAACCAAAGATCAATTAGGCCAATCCATAGATCTAGCACATCTGAAGTTCAGAATAACGCAAGCAGGTGGTGGAATAGCTGCAGCTCTGCTAAATGAATTGTTTGAAAACAATGAAGATACGTCTGAAGAAGGGATCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAACTCATGGATGGAGATGTACAATATCTGAGAGAAGCAGGCAAGTCAACATTCATTATATCTGTTGAGCTTGCGGCAGGCCACATGCCAATTTAG 3705 43.81 MAGPSPSRSQHRSWTSRRLGRSAIQWAVGALREDLAESRILKDSARRRNRKARAQQQRSRKIPDLWDSHGNWIGLARYTANWKRTRGRSDFIVPTNLGFFGIFHHPTVWTKMSSSRPSQSSSSSGRSRHSARIIAQTTVDAKLHANYEESSSSFDYSSSVRFTNTFGEDQQPKSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGEHPVLGIGIDVRSIFTAPSASALQKVLGFGEVTLLNPVLVHCKTSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMNAAGGLKSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCHAKPVKVIQDKKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLAMAVVVNEEDDDNENPNPVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMIYKNKVWRLGITPSEFQLQEIAAWLSEHHMDSTGLSTDSLYDAGFPGALALGDGVSGMATVRITSKDMICWFRTHAVAEIRWAGAKHEAGERDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDVQMVDTNSKSIHTKLSNLKIGGMQELEAVTGEIVRLIETAMVPILAVDGDGLVNGWNMKIAELTGLPVDEAIGKHFLSLVEDSSVDIVKKLLYLAFQGQEEKHVEFEIRTHGPRIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYIAIVQNPNPLIPPIFGMDEFGWCTEWNPAMTKLSGWKRDEVVDKILLGEVFGTQMACCPVKNQESCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYLECLLCASKKTDRDGAVTGIFCFLQLPSLELQKALHVQHLSEKTAIKRSKALAYMKRQIRSSLSGIIYSSEMLEGTALEVEQKHLLQSSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFTLHELLAASISQVMMKSREKGVLILNETAKEIQNEALYGDNARLQQILADFLLTSVSFSPVGGQIIISASLTKDQLGQSIDLAHLKFRITQAGGGIAAALLNELFENNEDTSEEGISLLVSRKLVKLMDGDVQYLREAGKSTFIISVELAAGHMPI 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 15174709 15181308 - BLOR09180 Blo18g00692 73996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00692 1234 SUPERFAMILY GAF domain-like 520 699 - -
Blo18g00692 1234 Pfam Phytochrome region 525 698 IPR013515 GO:0006355|GO:0009584
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 185 297 IPR035965 -
Blo18g00692 1234 MobiDBLite consensus disorder prediction 111 131 - -
Blo18g00692 1234 Gene3D - 517 690 IPR043150 -
Blo18g00692 1234 Gene3D PAS domain 691 858 - -
Blo18g00692 1234 CDD PAS 741 845 IPR000014 -
Blo18g00692 1234 Pfam PAS fold 180 296 IPR013654 GO:0006355
Blo18g00692 1234 PANTHER TWO-COMPONENT HISTIDINE KINASE 112 1230 - -
Blo18g00692 1234 SMART gaf_1 329 522 IPR003018 GO:0005515
Blo18g00692 1234 SMART HisKA_10 1005 1066 IPR003661 GO:0000155|GO:0007165
Blo18g00692 1234 SMART HKATPase_4 1117 1229 IPR003594 -
Blo18g00692 1234 Coils Coil 35 55 - -
Blo18g00692 1234 ProSitePatterns Phytochrome chromophore attachment site signature. 429 438 IPR013516 -
Blo18g00692 1234 TIGRFAM sensory_box: PAS domain S-box protein 735 851 IPR000014 -
Blo18g00692 1234 ProSiteProfiles PAS repeat profile. 728 798 IPR000014 -
Blo18g00692 1234 Gene3D - 310 673 IPR029016 -
Blo18g00692 1234 PRINTS Phytochrome signature 731 747 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 750 765 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 429 450 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 244 266 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 823 840 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 344 363 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 627 646 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 660 678 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 843 863 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 542 562 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 SUPERFAMILY GAF domain-like 310 509 - -
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 734 841 IPR035965 -
Blo18g00692 1234 Pfam GAF domain 329 512 IPR003018 GO:0005515
Blo18g00692 1234 ProSiteProfiles Histidine kinase domain profile. 1012 1229 IPR005467 -
Blo18g00692 1234 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1062 1223 IPR036890 -
Blo18g00692 1234 Pfam PAS fold 861 983 IPR013767 GO:0006355
Blo18g00692 1234 Pfam PAS fold 731 845 IPR013767 GO:0006355
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 875 981 IPR035965 -
Blo18g00692 1234 Gene3D PAS domain 185 432 - -
Blo18g00692 1234 Gene3D PAS domain 874 984 - -
Blo18g00692 1234 Coils Coil 509 529 - -
Blo18g00692 1234 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1117 1227 IPR003594 -
Blo18g00692 1234 CDD PAS 872 983 IPR000014 -
Blo18g00692 1234 PANTHER PHYTOCHROME A 112 1230 - -
Blo18g00692 1234 SMART pas_2 730 796 IPR000014 -
Blo18g00692 1234 SMART pas_2 860 930 IPR000014 -
Blo18g00692 1234 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 329 502 IPR016132 -
Blo18g00692 1234 ProSiteProfiles PAS repeat profile. 858 913 IPR000014 -
Blo18g00692 1234 Gene3D - 1068 1230 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00144 Blo-Chr7:1906954 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00443 Blo-Chr15:6505500 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00444 Blo-Chr15:6508401 Blo18g00692 Blo-Chr18:15174709 9.83E-97 dispersed
Blo17g00227 Blo-Chr17:2327485 Blo18g00692 Blo-Chr18:15174709 9.61E-35 dispersed
Blo17g00345 Blo-Chr17:3634663 Blo18g00692 Blo-Chr18:15174709 1.17E-42 dispersed
Blo18g00692 Blo-Chr18:15174709 Blo11g00327 Blo-Chr11:2706421 7.62E-42 dispersed
Blo18g00692 Blo-Chr18:15174709 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00692 K12120 - tcc:18600656 1792.7