Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00692 ATGGCGGGGCCATCACCATCACGTTCGCAGCATCGCAGTTGGACCAGCAGGAGGTTGGGCCGCAGCGCCATTCAGTGGGCCGTAGGAGCGCTGAGAGAAGATCTCGCAGAATCTCGGATTCTTAAGGATTCTGCGCGTCGACGGAATAGGAAGGCGCGTGCGCAGCAGCAGAGATCGAGGAAAATCCCAGATTTGTGGGATTCACACGGCAACTGGATAGGATTGGCGCGCTACACAGCAAATTGGAAGCGGACACGTGGCAGATCAGATTTTATTGTTCCAACTAATTTAGGTTTTTTTGGCATCTTTCACCACCCTACAGTTTGGACGAAAATGTCTTCTTCAAGACCGAGTCAATCATCAAGCAGCTCAGGTCGATCAAGACACAGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAGGAATCCAGTAGTTCTTTCGACTACTCAAGTTCAGTGCGCTTTACCAACACTTTTGGTGAAGATCAACAACCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCTTATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCCTACAGTGAAAATGCCACGGAAATGCTAACTATGGTCAGTCATGCAGTCCCAAGTGTTGGTGAACATCCAGTTCTTGGCATTGGGATTGATGTTAGGTCCATTTTTACTGCCCCAAGTGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTCTTAGTTCATTGTAAGACATCTGGGAGGCCCTTCTATGCAATCGTTCATCGTGTTACTGGAAGCTTGATCATCGATTTTGAACCAGTGAAGCCTTATGAAATACCAATGAATGCAGCTGGGGGCCTAAAATCTTACAGGCTTGCAGCAAAAGCAATTAACAGGTTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGTTCAAGAGGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCATGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCATTATCCAGCTACTGATATCCCTCAAGCTGCACGGTTTTTATTCATGAAGAATAAGGTCCGAATTATTGTTGATTGTCATGCAAAACCTGTGAAAGTGATCCAAGACAAAAAACTTTCCTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGGCTATGGCTGTTGTGGTCAACGAGGAAGATGACGATAATGAAAATCCCAATCCCGTGCAACCACAAAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTCTTAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAACAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTTTTGTGCGACATGTTAATGCGAGACGCACCATTAGGCATTGTGACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCATGATATACAAAAATAAGGTATGGAGATTGGGAATAACTCCTAGTGAATTCCAGCTCCAAGAAATTGCCGCATGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGCTTGTATGATGCGGGTTTCCCAGGAGCTCTCGCACTTGGTGATGGAGTGAGTGGAATGGCTACTGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTACCCATGCTGTCGCAGAAATTCGATGGGCCGGGGCAAAGCATGAAGCTGGTGAAAGGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCATGGAAGGACTATGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTGAAAGATGTGCAAATGGTTGATACGAACAGCAAATCAATTCATACAAAACTCAGCAACCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGGAGACGGCCTGGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGACGAAGCTATCGGAAAGCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTAGATATAGTCAAGAAGTTGTTGTACTTGGCGTTCCAAGGACAAGAGGAGAAACACGTAGAATTTGAGATCAGAACTCATGGGCCTAGGATCGATGCAGGTCCCATTAGCTTAGTTGTGAACGCTTGTGCAAGCAGGGATTTGGAGGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGACTACATAGCAATTGTGCAGAACCCAAATCCACTAATCCCCCCTATATTTGGTATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCGATGACAAAGTTAAGTGGGTGGAAGCGAGATGAAGTTGTTGATAAAATACTTTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCCGGTCAAGAATCAAGAATCGTGTGTAAATCTTGGTGTTGTGCTTAATAATGCTATGAGTGGCCAAAATCCTGAAAAGATTTCGTTTGGTTTCTATGATCGGAAAGGAAAATACTTAGAATGTCTGTTGTGTGCGAGTAAGAAAACAGACAGAGATGGTGCAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTGCAGAAAGCACTCCACGTGCAGCACTTATCCGAGAAAACTGCCATAAAGAGATCGAAAGCATTGGCGTATATGAAAAGGCAGATACGAAGTTCTCTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAATCAAGCACACAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTACTCTACATGAACTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAAGGTGTTCTCATACTAAATGAGACAGCTAAAGAGATCCAGAATGAAGCTCTATATGGTGATAATGCGAGGCTTCAGCAAATTTTGGCTGATTTCTTACTAACATCAGTCAGTTTTTCCCCAGTAGGCGGCCAGATTATTATTTCGGCCAGTCTAACCAAAGATCAATTAGGCCAATCCATAGATCTAGCACATCTGAAGTTCAGAATAACGCAAGCAGGTGGTGGAATAGCTGCAGCTCTGCTAAATGAATTGTTTGAAAACAATGAAGATACGTCTGAAGAAGGGATCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAACTCATGGATGGAGATGTACAATATCTGAGAGAAGCAGGCAAGTCAACATTCATTATATCTGTTGAGCTTGCGGCAGGCCACATGCCAATTTAG 3705 43.81 MAGPSPSRSQHRSWTSRRLGRSAIQWAVGALREDLAESRILKDSARRRNRKARAQQQRSRKIPDLWDSHGNWIGLARYTANWKRTRGRSDFIVPTNLGFFGIFHHPTVWTKMSSSRPSQSSSSSGRSRHSARIIAQTTVDAKLHANYEESSSSFDYSSSVRFTNTFGEDQQPKSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGEHPVLGIGIDVRSIFTAPSASALQKVLGFGEVTLLNPVLVHCKTSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMNAAGGLKSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCHAKPVKVIQDKKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLAMAVVVNEEDDDNENPNPVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMIYKNKVWRLGITPSEFQLQEIAAWLSEHHMDSTGLSTDSLYDAGFPGALALGDGVSGMATVRITSKDMICWFRTHAVAEIRWAGAKHEAGERDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDVQMVDTNSKSIHTKLSNLKIGGMQELEAVTGEIVRLIETAMVPILAVDGDGLVNGWNMKIAELTGLPVDEAIGKHFLSLVEDSSVDIVKKLLYLAFQGQEEKHVEFEIRTHGPRIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYIAIVQNPNPLIPPIFGMDEFGWCTEWNPAMTKLSGWKRDEVVDKILLGEVFGTQMACCPVKNQESCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYLECLLCASKKTDRDGAVTGIFCFLQLPSLELQKALHVQHLSEKTAIKRSKALAYMKRQIRSSLSGIIYSSEMLEGTALEVEQKHLLQSSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFTLHELLAASISQVMMKSREKGVLILNETAKEIQNEALYGDNARLQQILADFLLTSVSFSPVGGQIIISASLTKDQLGQSIDLAHLKFRITQAGGGIAAALLNELFENNEDTSEEGISLLVSRKLVKLMDGDVQYLREAGKSTFIISVELAAGHMPI 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 15174709 15181308 - BLOR09180 Blo18g00692 73996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00692 1234 SUPERFAMILY GAF domain-like 520 699 - -
Blo18g00692 1234 Pfam Phytochrome region 525 698 IPR013515 GO:0006355|GO:0009584
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 185 297 IPR035965 -
Blo18g00692 1234 MobiDBLite consensus disorder prediction 111 131 - -
Blo18g00692 1234 Gene3D - 517 690 IPR043150 -
Blo18g00692 1234 Gene3D PAS domain 691 858 - -
Blo18g00692 1234 CDD PAS 741 845 IPR000014 -
Blo18g00692 1234 Pfam PAS fold 180 296 IPR013654 GO:0006355
Blo18g00692 1234 PANTHER TWO-COMPONENT HISTIDINE KINASE 112 1230 - -
Blo18g00692 1234 SMART gaf_1 329 522 IPR003018 GO:0005515
Blo18g00692 1234 SMART HisKA_10 1005 1066 IPR003661 GO:0000155|GO:0007165
Blo18g00692 1234 SMART HKATPase_4 1117 1229 IPR003594 -
Blo18g00692 1234 Coils Coil 35 55 - -
Blo18g00692 1234 ProSitePatterns Phytochrome chromophore attachment site signature. 429 438 IPR013516 -
Blo18g00692 1234 TIGRFAM sensory_box: PAS domain S-box protein 735 851 IPR000014 -
Blo18g00692 1234 ProSiteProfiles PAS repeat profile. 728 798 IPR000014 -
Blo18g00692 1234 Gene3D - 310 673 IPR029016 -
Blo18g00692 1234 PRINTS Phytochrome signature 731 747 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 750 765 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 429 450 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 244 266 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 823 840 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 344 363 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 627 646 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 660 678 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 843 863 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 PRINTS Phytochrome signature 542 562 IPR001294 GO:0006355|GO:0009584
Blo18g00692 1234 SUPERFAMILY GAF domain-like 310 509 - -
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 734 841 IPR035965 -
Blo18g00692 1234 Pfam GAF domain 329 512 IPR003018 GO:0005515
Blo18g00692 1234 ProSiteProfiles Histidine kinase domain profile. 1012 1229 IPR005467 -
Blo18g00692 1234 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1062 1223 IPR036890 -
Blo18g00692 1234 Pfam PAS fold 861 983 IPR013767 GO:0006355
Blo18g00692 1234 Pfam PAS fold 731 845 IPR013767 GO:0006355
Blo18g00692 1234 SUPERFAMILY PYP-like sensor domain (PAS domain) 875 981 IPR035965 -
Blo18g00692 1234 Gene3D PAS domain 185 432 - -
Blo18g00692 1234 Gene3D PAS domain 874 984 - -
Blo18g00692 1234 Coils Coil 509 529 - -
Blo18g00692 1234 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1117 1227 IPR003594 -
Blo18g00692 1234 CDD PAS 872 983 IPR000014 -
Blo18g00692 1234 PANTHER PHYTOCHROME A 112 1230 - -
Blo18g00692 1234 SMART pas_2 730 796 IPR000014 -
Blo18g00692 1234 SMART pas_2 860 930 IPR000014 -
Blo18g00692 1234 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 329 502 IPR016132 -
Blo18g00692 1234 ProSiteProfiles PAS repeat profile. 858 913 IPR000014 -
Blo18g00692 1234 Gene3D - 1068 1230 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00692 K12120 PHYA; phytochrome A - tcc:18600656 1792.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00144 Blo-Chr7:1906954 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00443 Blo-Chr15:6505500 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00444 Blo-Chr15:6508401 Blo18g00692 Blo-Chr18:15174709 9.83E-97 dispersed
Blo17g00227 Blo-Chr17:2327485 Blo18g00692 Blo-Chr18:15174709 9.61E-35 dispersed
Blo17g00345 Blo-Chr17:3634663 Blo18g00692 Blo-Chr18:15174709 1.17E-42 dispersed
Blo18g00692 Blo-Chr18:15174709 Blo11g00327 Blo-Chr11:2706421 7.62E-42 dispersed
Blo18g00692 Blo-Chr18:15174709 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00692 Blo_Chr18 FPKM 4.916214 5.82179 10.164165 11.902617 47.251358 45.985607 51.030483 8.164141 9.095771 10.218423